XLOC_000340 (BX908780.5)


Basic Information

Item Value
gene id XLOC_000340
gene name BX908780.5
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 29174195 ~ 29180648 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000585
attcaaatataatctTTCTTCAAGAAACTCACTCAGAAGCTGTGGATGTTCCGTTTTGGCGTAATCATGGcatgatgatattttttttagTCACGGCACAAATCATTCCGGAGGAGTTGCTATTTGTTTGCAGAAATGTCCCGGTAAGATAATTTTTCACAAAGCTGATGATGATGGACATTGGTTAGTAATTGTTCTTAATTTAGATAAACACTTccttattttgataaatgtgtaCGGGTATAACAACCGCAGCCAAAATAATGATTTACTCTGCTTAATTACTGATATTATTAGTGAATTAAAAATCACCTATCCCACAGAATTTATTTTGATTGGAGGGGATTTTAATTTAACGCCAGACTTATGGCTAGATAGGGAGCCCTCTAAGCACAAGTTAGCTCATGTTAataacataattaaacatttttgtgttcaaaataatttaattgataTCTGGAGAAAGCGGAATCCTGGAATTAAACAGTTTACTTGGGTCAAACCGAACGCAGAGGCTAGAACAAGAATTGATTACTGGCTCGGCACGGACACTGTTTTTAAATACGTGTATAATTGTTCTATCTCTAGTGCACCGTTAACCGATCACTGTGTAATTAAGCtaaatt

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000096648

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000585 True 626 lncRNA 0.35 2 29174195 29180648

Neighbor

gene id symbol gene type direction distance location
XLOC_000339 ankrd10a coding upstream 9284 29140884 ~ 29164911 (+)
XLOC_000338 cryaa coding upstream 73272 29096881 ~ 29100923 (+)
XLOC_000337 cbsa coding upstream 80633 29068649 ~ 29093562 (+)
XLOC_000336 CU469541.1 coding upstream 269560 28903770 ~ 28904635 (+)
XLOC_000335 NA coding upstream 700782 28472199 ~ 28473413 (+)
XLOC_000342 cars2 coding downstream 3314 29183962 ~ 29202689 (+)
XLOC_000343 irs2a coding downstream 30892 29211540 ~ 29228393 (+)
XLOC_000344 lig4 coding downstream 87193 29267841 ~ 29271473 (+)
XLOC_000345 fam155a coding downstream 101116 29281764 ~ 29391034 (+)
XLOC_000346 BX908780.2 coding downstream 130879 29311527 ~ 29312559 (+)
XLOC_000327 NA non-coding upstream 2433046 26740115 ~ 26741149 (+)
XLOC_000325 NA non-coding upstream 2502985 26664689 ~ 26671210 (+)
XLOC_000323 AL954695.3 non-coding upstream 2589602 26577288 ~ 26584593 (+)
XLOC_000347 CT573186.1 non-coding downstream 263804 29444452 ~ 29445719 (+)
XLOC_000348 CT573186.2 non-coding downstream 270817 29451465 ~ 29452733 (+)
XLOC_000349 NA non-coding downstream 319660 29500308 ~ 29501034 (+)
XLOC_000350 CR774189.1 non-coding downstream 326999 29507647 ~ 29508473 (+)

Expression


Co-expression Network