G1487325


Basic Information

Item Value
gene id G1487325
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 74546422 ~ 74555701 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1700561
GTTATTCCTTGATCTTTTTCTGGAGCTGAATGGTCAAGGCTTGTTCATCTTCAATCTTGGTGGTGATCTGGTTAATTTCAAAGTCTCACTTGGTCAGCTTCTATTGAAGTTGCTGCTTGTCATTCTGCAGGTCCATGACAGACTCCGTGGATAGCTTCAGGTCCCCCTCCAGCTTGCACTTGACCCATTCCAGGTCCATCCTTCTTCTCTTGCTCCAAACAACCTCCCTACTTATGTCCAAACTTGTACTGGTTGTGGTCGATCTCGAGGGACCCGAACAGTTTCTCTGTTGCTTTCCTGCTGTCCACAAACGCATCATCAGCGATGGCATGTGGGTTCATGATGTGATAGCTGAGAGTAAAAAGAAAACATTGTATTGTATATGATTGAttccaaatgtattttatgtgtgtgtgtgttgtgggaaTGAAAGTGTGTTATCACACTCACCACTGTTAAAACTCTGCGTAGATTATGTTGTTTAGAAATCCCTTCCTGCAGATCCTGACACCCACCAGCAAACCGTTCCAGCGAAGCTGGTGCAGCTTCAAGAAGGTATCCATGATCACTGCAGAGGGGGTTATCAATCAGAGAGAAGACGCTCTCTGGAGCACTTACAGTAAATAACATATGTTCCTACGATTTCCTTGGCACTCAGATTTAATTGGATCTCAGTTGAATGCTATACCTGGAGTCTTGGTCTCGTTGGGGATAAGGCTAAGGACAAAGTGAGTGCAGCAGAGGTTAGTCATCAGCTTGTTCAGATTCTTATTCAGAGCGACATAAAGTAAGTGCATTCAtctatgtcacgccctgatctgtttcatctgtccttgtgcttgtgctcatctccacctcctccaggtgtcgcccatcttccccacttatcccctggGTAGTTTGTCtggtcttgtttgttcaagcctaccagcgttttgtctcagctcctgtttttccccagtctctttttttcaccctcctggtttttgacccttgcctgtcctgaccatgTACCTGCCCACCTGCCCACCTGACCACTCGGCCTgtccctgactctgagcctgcctgccgtcctgtacctttgctccacctctggattaccgacctctgtgataaaataatttatatgtttaaagataatgattaaataattccactctgaaaacatataattgtatgaaatgtattagaatcataaaactataatctgatgatgtgtgtagttttagtcagaattagaacaaggacctTTCGATCCTTTTTAGTATGTAAGCAGGGTGCAAGTGGGAAACAAATGATAAGAGGAGCTATCGACAGATGAGTTGTactactgtgttccttacaggacatgtTGTCTCCACCCTTGGAGGGGAGAAACTGTTAGGCTTGCAGAAAATTATGAAACGTTGCAGATTAAAGAAACAATGTATCTATGTAGTGGAAAAACACtgactgtctgagcaaggcgtaGCTTAAGATTTGAActggtttgtgtgtgttataaagACTGTGTTTGCATTTTTGATtttagaacgttctctgaataaactgtaTTTACCTTTTGCATAAActgagtctttgcctaattattattatacCCATGGTTTTACAAACCTCGGGGATTGGTCAAAGCTATTGATTGTTAgttatcattgggattgaaaattcttggtacactctgcctgacctgacgcTGAGCTTGCCTGTCGTCCTGTACCTTGACTTCCACTCTGGATTatcaacccctgcctgccttgacctgtcgtttgcttgcccctgcacttgggtcttaccttgattcctgataatctaggtgagacaaccacatatcacagtaaaatatacaggatacaaacattccatttcagcaaaacaatggatatatagtGTTTAGAAAACACATTTTCATACACATGTAAAATCTATTAATTAAAAGTCTGAGAATAAGAAGATTTTACAaacacatgaaggtacccataagcaATACTTTCTGATGAATAAATACAAATTAGAAAAATGTGTGGATATAGCGTTTTCAAAATAAACTAGTCAATATCTAAGTTCTTGCTGCAGTTAATGAGAATATGCTCTCCCTCACTCCTTCAGTTGTTGTGCACAGCTGAAGCTCATCCATTGACTTCAGGGAGGAAACAGTATGTGATGCATATGA
>TU1700562
GTTATTCCTTGATCTTTTTCTGGAGCTGAATGGTCAAGGCTTGTTCATCTTCAATCTTGGTGGTGATCTGGTTAATTTCAAAGTCTCACTTGGTCAGCTTCTATTGAAGTTGCTGCTTGTCATTCTGCAGGTCCATGACAGACTCCGTGGATAGCTTCAGGTCCCCCTCCAGCTTGCACTTGACCCATTCCAGGTCCATCCTTCTTCTCTTGCTCCAAACAACCTCCCTACTTATGTCCAAACTTGTACTGGTTGTGGTCGATCTCGAGGGACCCGAACAGTTTCTCTGTTGCTTTCCTGCTGTCCACAAACGCATCATCAGCGATGGCATGTGGGTTCATGATGTGATAGCTGAGAGTAAAAAGAAAACATTGTATTGTATATGATTGAttccaaatgtattttatgtgtgtgtgtgttgtgggaaTGAAAGTGTGTTATCACACTCACCACTGTTAAAACTCTGCGTAGATTATGTTGTTTAGAAATCCCTTCCTGCAGATCCTGACACCCACCAGCAAACCGTTCCAGCGAAGCTGGTGCAGCTTCAAGAAGGTATCCATGATCACTGCAGAGGGGGTTATCAATCAGAGAGAAGACGCTCTCTGGAGCACTTACAGTAAATAACATATGTTCCTACGATTTCCTTGGCACTCAGATTTAATTGGATCTCAGTTGAATGCTATACCTGGAGTCTTGGTCTCGTTGGGGATAAGGCTAAGGACAAAGTGAGTGCAGCAGAGGTTAGTCATCAGCTTGTTCAGATTCTTATTCAGAGCGACATAAAGTAAGTGCATTCAtctatgtcacgccctgatctgtttcatctgtccttgtgcttgtgctcatctccacctcctccaggtgtcgcccatcttccccacttatcccctggGTAGTTTGTCtggtcttgtttgttcaagcctaccagcgttttgtctcagctcctgtttttccccagtctctttttttcaccctcctggtttttgacccttgcctgtcctgaccatgTACCTGCCCACCTGCCCACCTGACCACTCGGCCTgtccctgactctgagcctgcctgccgtcctgtacctttgctccacctctggattaccgacctctgtgataaaataatttatatgtttaaagataatgattaaataattccactctgaaaacatataattgtatgaaatgtattagaatcataaaactataatctgatgatgtgtgtagttttagtcagaattagaacaaggacctTTCGATCCTTTTTAGTATGTAAGCAGGGTGCAAGTGGGAAACAAATGATAAGAGGAGCTATCGACAGATGAGTTGTactactgtgttccttacaggacatgtTGTCTCCACCCTTGGAGGGGAGAAACTGTTAGGCTTGCAGAAAATTATGAAACGTTGCAGATTAAAGAAACAATGTATCTATGTAGTGGAAAAACACtgactgtctgagcaaggcgtaGCTTAAGATTTGAActggtttgtgtgtgttataaagACTGTGTTTGCCTTTTTGATTTTAGAATgttctctgaataaactgtactaaccttttgcataagctgagtctttgcctaattattattatacccatggtcttacaaacctcggggattggtcaaagctattgattgttatcattgggattgaaaattcttggtacactctgcctgacctgacgcTGAGCTTGCCTGTCGTCCTGTACCTTGACTTCCACTCTGGATTatcaacccctgcctgccttgacctgtcgtttgcttgcccctgcacttgggtcttaccttgattcctgataatctaggtgagacaaccacatatcacagtaaaatatacaggatacaaacattccatttcagcaaaacaatggatatatagtGTTTAGAAAACACATTTTCATACACATGTAAAATCTATTAATTAAAAGTCTGAGAATAAGAAGATTTTACAaacacatgaaggtacccataagcaATACTTTCTGATGAATAAATACAAATTAGAAAAATGTGTGGATATAGCGTTTTCAAAATAAACTAGTCAATATCTAAGTTCTTGCTGCAGTTAATGAGAATATGCTCTCCCTCACTCCTTCAGTTGTTGTGCACAGCTGAAGCTCATCCATTGACTTCAGGGAGGAAACAGTATGTGATGCATATGA

Function

NR:

description
PREDICTED: myosin-7-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1700561 False 2170 lncRNA 0.42 4 74546422 74555701
TU1700562 True 2166 lncRNA 0.42 4 74546422 74555701

Neighbor

gene id symbol gene type direction distance location
LOC110494553 LOC106565783 coding upstream 16549 74517673 ~ 74529873 (+)
LOC110493253 LOC106565927 coding upstream 28984 74510781 ~ 74517438 (+)
LOC110494552 LOC106565784 coding upstream 40748 74456019 ~ 74505674 (+)
LOC110494551 NA coding upstream 90888 74435617 ~ 74455534 (+)
LOC110493252 LOC106565788 coding upstream 114002 74388428 ~ 74432420 (+)
LOC110494557 LOC106565945 coding downstream 62116 74617817 ~ 74622094 (+)
LOC110494558 LOC106565781 coding downstream 70284 74625985 ~ 74635714 (+)
LOC110494561 LOC106565779 coding downstream 88477 74644178 ~ 74656005 (+)
LOC110494562 LOC106565780 coding downstream 119789 74675490 ~ 74681473 (+)
adnpa LOC106565775 coding downstream 180520 74736221 ~ 74741481 (+)
G1487295 NA non-coding upstream 38633 74484274 ~ 74507789 (+)
G1487267 NA non-coding upstream 130013 74415825 ~ 74416409 (+)
G1487264 NA non-coding upstream 133992 74412135 ~ 74412430 (+)
LOC110493251 LOC106565789 non-coding upstream 232986 74313191 ~ 74387161 (+)
G1487372 NA non-coding downstream 86978 74642679 ~ 74643086 (+)
G1487346 NA non-coding downstream 100977 74656678 ~ 74657334 (+)
G1487345 NA non-coding downstream 101722 74657423 ~ 74657775 (+)
G1487375 NA non-coding downstream 104790 74660491 ~ 74660795 (+)
G1487377 NA non-coding downstream 111059 74666760 ~ 74667072 (+)
G1486811 NA other upstream 566987 73978890 ~ 73979435 (+)
G1485819 NA other upstream 1264403 73281260 ~ 73282019 (+)
G1485260 NA other upstream 1421066 73122826 ~ 73125356 (+)
LOC110494525 LOC106565811 other upstream 1500834 73044346 ~ 73049958 (+)
G1490016 NA other downstream 2127898 76683599 ~ 76684020 (+)
G1491886 NA other downstream 3452589 78008290 ~ 78008799 (+)
G1491899 NA other downstream 3462667 78018368 ~ 78019816 (+)
G1491963 NA other downstream 3633311 78189012 ~ 78190290 (+)
G1492003 NA other downstream 3696928 78252629 ~ 78253308 (+)

Expression


Co-expression Network