G1487640 (gata1)


Basic Information

Item Value
gene id G1487640
gene name gata1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 74752759 ~ 74763619 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1700934
TACTTTGTGTCTGTATGCTCTGTATGGTGCTGCCTTTATGGGTCTGCATATGCCCAGGTCTGTTTCACACCAGAGTGGGCACCATGGCAGTGTTAGGGTGTTGGGTGTAGGACAGGTTGGCAGATGGGTGCAGGCCGGAAGGGGGGGGGAGGAAGTGAGGGGTGTGGCTGTAGGAGAGCAGTGACCCTGGGCCCAGGGAGTAAGGGCCCCCGTGGTAATCGAGGGTGGGACCCTGTGATAGGTCAGGGTATTGCTCCAACATGGCACTCATCTTGCCCTTCTTGTTCTTGTTGGACACTTTACGGTTTCGTGTTTGGATACCGTCTTTCTTCATAGTAAGGGGTCTGTTGACCTGTGAAAAGAGAAGTGTGCCTTTACTTCATATACATAAGTTAGTACATTCTCTTTCTCCGTTATTACCCTGAAACTACTATACTACATGAGGTAGATCTAAAACAAACCGCTATTGCGGTTCAATGACTAGGGTTCAGTAGCTTGGAGTTGTGTGGGGTTTTGTCTTTTTAACCAGTGAAGGGGTGCTAGCTAGAAGCTGGTAATAGTAGCTCTCTAGCAGTCAGTATACTGTATCAGTGTATCTTGTTCATTAACTCACGTTGTGCAGCTTGAAATAGAGTCCACAGGCGTTGCACACAGGCTCACCGCTGGCGTTCCGTCTCCACAATGTGGTGGTGCTGGTGTTACAGTTGGCACATTGTGTCCCAGCCCGCTTACTGAtaatctgaaacagagagagaggaatgtacatcAATTCTGTGGATGAAAGGTGAGTTCCAATGTTCATTTGGAATCTTTGAGTTTTTCAATCAGTAGATTGGCATGTCAACACAATAGAATTTACAACTGATTAGCTTATCCAATCCTTGTGCCATATCATACCAGTCTTTTCTTTGGCCGGATCAGGGGACGGTTTTGGCCATTCATCTTGTGATAAAGCCCACAGGCGTTACACAGGTAGTGTCCTGTCCCATCTCGACGCCATAGAGGGGTGTTAGTGGCTCCACAGTTGACGCACTCCCTGGCGTCTGTGGGGACAGCCTCATCTTATTACGTAGTTTGGGAGAGTAGGAGGAGGGGTTAATCCATGCCCCTGGAGAGTAGAGGCCTGCTGTGCTGTAGTCCTGTGGAGAGGTTATGTACGAGCTGTAGGGGCCCAGCATCTGCGAGTGGGAGTGGGGAGATGGTGTGTAAACACCCCCAGCAGCTGAAGTCAGATTCAGAAAACTGCTTCCACCACCTCCCCCTAAAGGACTCAAGCGCTCGGCCTTCAAGGCCTCCTGAAGCCTGGGACTTTCCTTGCCATCCCTGCCTGGAGAGGAGTACCCATTTCTGCAGGAAAACGAGGATGTGGCACTGGAGGCATAAAGGGAGGTTGGGGTGTGTGGGTGCAGTGGAGTCTTGGTGAAAGGGTTACTGGTCCAAGTAGAGGTTGATGGGTTGTAAGGAGAGCTCAGAGAGTGGCTTCCAGGCCCTTCCAGCCATTGGAGGTTGCttgggagagagggtgaggagtaCACTTGGCGAACTGTATGAGAGAGATACAATAGAAGGGCATAGTTGTCAGGGGAGTCCCTCATTACACATTTTTCAAATACTTTTATATTCAATGTTAATTTAAACTCTGAAAGGTCAACATAAACGTTGTAAAGTTATGTAAGGTTCCACACTGCTGACCTGAGCTGTGTCTGTAGGCTGATGGAGCCCTGCTGTGGCTGGGGTTGGAGAAGTAGGAGGGCAGGCTGGTGAAATCAGTCTCATGGTTGGAGAAGAAgggctctccctcctctcctggagGTAGTAAGCCAGGCTCTGAGGAGAAGCTGGCCAGGGGATCAGAGCTGAGCAGAGCCGGAGACACCCAGTGAGACTGTTCAGTGGAATCCTCCATGTTTACAGAGATAACCA

Function

symbol description
gata1 Enables several functions, including C2H2 zinc finger domain binding activity; DNA binding activity; and DNA-binding transcription activator activity, RNA polymerase II-specific. Involved in several processes, including myeloid cell differentiation; regulation of cellular macromolecule biosynthetic process; and regulation of erythrocyte differentiation. Located in nucleoplasm. Part of protein-DNA complex and transcription repressor complex. Implicated in several diseases, including Down syndrome; X-linked recessive disease (multiple); beta thalassemia; colon adenocarcinoma; and hematologic cancer (multiple). Biomarker of clear cell renal cell carcinoma; colorectal cancer; hematologic cancer (multiple); lung cancer; and major depressive disorder.

NR:

description
erythroid transcription factor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1700934 True 1923 lncRNA 0.50 2 74752759 74763619

Neighbor

gene id symbol gene type direction distance location
LOC110494565 LOC106565774 coding upstream 3640 74746187 ~ 74749119 (+)
adnpa LOC106565775 coding upstream 11278 74736221 ~ 74741481 (+)
LOC110494562 LOC106565780 coding upstream 71286 74675490 ~ 74681473 (+)
LOC110494561 LOC106565779 coding upstream 96754 74644178 ~ 74656005 (+)
LOC110494558 LOC106565781 coding upstream 117045 74625985 ~ 74635714 (+)
LOC118940106 NA coding downstream 5013 74768632 ~ 74770253 (+)
opn1sw2 LOC100135984 coding downstream 75929 74839548 ~ 74842075 (+)
LOC110493256 LOC106565770 coding downstream 90507 74854126 ~ 74858312 (+)
LOC100135982 LOC100136940 coding downstream 95295 74858914 ~ 74861767 (+)
gnl3l gnl3l coding downstream 113574 74877193 ~ 74895463 (+)
G1487639 NA non-coding upstream 631 74751918 ~ 74752128 (+)
G1487423 NA non-coding upstream 8950 74743590 ~ 74743809 (+)
G1487419 NA non-coding upstream 23384 74729141 ~ 74729375 (+)
G1487412 NA non-coding upstream 31642 74720545 ~ 74721117 (+)
G1487411 NA non-coding upstream 32271 74719923 ~ 74720488 (+)
G1487644 NA non-coding downstream 8942 74772561 ~ 74772783 (+)
G1487650 NA non-coding downstream 23439 74787058 ~ 74787346 (+)
G1487771 NA non-coding downstream 108001 74871620 ~ 74871843 (+)
G1487778 NA non-coding downstream 111563 74875182 ~ 74875389 (+)
G1487790 NA non-coding downstream 135814 74899433 ~ 74899684 (+)
LOC110493252 LOC106565788 other upstream 343570 74388428 ~ 74432420 (+)
G1486811 NA other upstream 773324 73978890 ~ 73979435 (+)
G1485819 NA other upstream 1470740 73281260 ~ 73282019 (+)
G1485260 NA other upstream 1627403 73122826 ~ 73125356 (+)
LOC110494525 LOC106565811 other upstream 1707171 73044346 ~ 73049958 (+)
G1490016 NA other downstream 1919980 76683599 ~ 76684020 (+)
G1491886 NA other downstream 3244671 78008290 ~ 78008799 (+)
G1491899 NA other downstream 3254749 78018368 ~ 78019816 (+)
G1491963 NA other downstream 3425393 78189012 ~ 78190290 (+)
G1492003 NA other downstream 3489010 78252629 ~ 78253308 (+)

Expression


Co-expression Network