G1488518 (LOC105030512)


Basic Information

Item Value
gene id G1488518
gene name LOC105030512
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 75490213 ~ 75490739 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1701907
taacttcacagatcttcaatgtaaagggtataaacacggtttcccatgcttgttccaTGAAtcacaaacaattaatgaacatgcatctgtggaacATTCGTTTAGACATTAACTTCAGACGGTAGGCAataaaggtcacagttatgaaaacttagaacactaaagaggcctttctactgaaaaataccaaaagaaagatgcccagggtccctgctcatctgtgtgaacgtgccttagatatgctgcaaggaggcatgaggactgcagatgtggccagggcaataaattgtaatgtccgtactgtgagacgacTAAAACAGTGCAACGGGGAGAAAGGAAAGACAGCTGaccgtccttgcagtggcagaccacgtgtaacaacacctgcacaggatcggttcatccgaacatcacacctgcgggacagttacaggatggcaacaacaactgcctgagttacaccaggaacgcacaatccctccatcagtgctcagactgtctgcaataggctgagagaggctggactg

Function

NR:

description
PREDICTED: uncharacterized protein LOC105030512

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1701907 True 527 lncRNA 0.46 1 75490213 75490739

Neighbor

gene id symbol gene type direction distance location
LOC110494580 LOC106565755 coding upstream 230458 75179006 ~ 75259755 (+)
mst1rb LOC106565756 coding upstream 418785 75052878 ~ 75071428 (+)
mon1a LOC106565757 coding upstream 440153 75043905 ~ 75050060 (+)
grm6b LOC106565758 coding upstream 455745 75014868 ~ 75034468 (+)
comtb NA coding upstream 478509 75009395 ~ 75011704 (+)
arl6ip5a LOC106565746 coding downstream 400868 75891607 ~ 75895493 (+)
mitfa LOC106565743 coding downstream 515444 76006183 ~ 76046166 (+)
zgc:113054 LOC106565741 coding downstream 582324 76073063 ~ 76088669 (+)
LOC110494598 LOC106565734 coding downstream 968719 76459458 ~ 76463496 (+)
gxylt2 LOC106565732 coding downstream 1149608 76640347 ~ 76657067 (+)
G1488515 NA non-coding upstream 7817 75482193 ~ 75482396 (+)
G1488502 NA non-coding upstream 24325 75465473 ~ 75465888 (+)
G1488501 NA non-coding upstream 27128 75462869 ~ 75463085 (+)
G1488470 NA non-coding upstream 69519 75420353 ~ 75420694 (+)
G1488462 NA non-coding upstream 74546 75415392 ~ 75415667 (+)
G1488522 NA non-coding downstream 2824 75493563 ~ 75493791 (+)
G1488590 NA non-coding downstream 25096 75515835 ~ 75516066 (+)
G1488591 LOC106565752 non-coding downstream 25712 75516451 ~ 75519874 (+)
G1488596 NA non-coding downstream 33069 75523808 ~ 75524083 (+)
G1488598 NA non-coding downstream 36575 75527314 ~ 75527775 (+)
LOC110493252 LOC106565788 other upstream 1081024 74388428 ~ 74432420 (+)
G1486811 NA other upstream 1510778 73978890 ~ 73979435 (+)
G1485819 NA other upstream 2208194 73281260 ~ 73282019 (+)
G1485260 NA other upstream 2364857 73122826 ~ 73125356 (+)
LOC110494525 LOC106565811 other upstream 2444625 73044346 ~ 73049958 (+)
G1490016 NA other downstream 1192860 76683599 ~ 76684020 (+)
G1491886 NA other downstream 2517551 78008290 ~ 78008799 (+)
G1491899 NA other downstream 2527629 78018368 ~ 78019816 (+)
G1491963 NA other downstream 2698273 78189012 ~ 78190290 (+)
G1492003 NA other downstream 2761890 78252629 ~ 78253308 (+)

Expression


Co-expression Network