G1490320 (LOC106586052)


Basic Information

Item Value
gene id G1490320
gene name LOC106586052
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 76885545 ~ 76886318 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1703881
gtccaagatcttcttgtggcagggaggagactgtgcgccatgtcttttgggactgtgcctttgccggagtagtatgggctagggcacgggtgttgttaggtttggtaaggggggattttgtattgacgtgggccaggttagagagcggtgtagggagagcgagagggacggatagggacaggtttctgctctggcttctcatgagtctctttaaacgggggctgtgggaagccaggcagaacatggtgaagacagggagagattggggggtggaagggatagtgaggagggtggaaggagatttgagggggaggatgaagagggaggagaggaagtgggggcagcatgctgcccgggagaggtggaaggggggtttagggctgggtgtcatttagatttgtaaggggatagattagggacggggagatagggaaaggtagtttgtaggatgacggggagggaagatgctcccctgaggttttgtttggggtttttgttttgtttaaattaaaataccactatttgagtttgtatggaaattatgagttgtaaagaatgaatggtattgataataataaattatttttataaaaaataaaaaaaaatagggctgttttgtttttttcacgttacgtttagtgttttgtattgttcgttattatctttattaaagatgtatcgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaat

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1703881 True 716 lncRNA 0.44 2 76885545 76886318

Neighbor

gene id symbol gene type direction distance location
LOC110494602 LOC106565731 coding upstream 212337 76663444 ~ 76673208 (+)
gxylt2 LOC106565732 coding upstream 228478 76640347 ~ 76657067 (+)
LOC110494598 LOC106565734 coding upstream 422049 76459458 ~ 76463496 (+)
zgc:113054 LOC106565741 coding upstream 796876 76073063 ~ 76088669 (+)
mitfa LOC106565743 coding upstream 839379 76006183 ~ 76046166 (+)
LOC110494606 LOC106565729 coding downstream 280557 77166875 ~ 77261192 (+)
LOC110494607 LOC106565728 coding downstream 448967 77335285 ~ 77448701 (+)
LOC110494608 LOC106565727 coding downstream 666209 77552527 ~ 77771222 (+)
LOC110493259 NA coding downstream 1128025 78014343 ~ 78015218 (+)
LOC110494613 NA coding downstream 1142273 78028591 ~ 78029532 (+)
G1490317 NA non-coding upstream 5908 76879399 ~ 76879637 (+)
G1490134 NA non-coding upstream 39589 76845690 ~ 76845956 (+)
G1490098 NA non-coding upstream 42738 76797977 ~ 76842807 (+)
G1490023 NA non-coding upstream 192545 76692692 ~ 76693000 (+)
G1490341 NA non-coding downstream 17463 76903781 ~ 76904002 (+)
G1490350 NA non-coding downstream 27669 76913987 ~ 76914224 (+)
G1490353 NA non-coding downstream 28639 76914957 ~ 76915190 (+)
G1490357 NA non-coding downstream 30850 76917168 ~ 76917429 (+)
G1490371 NA non-coding downstream 42332 76928650 ~ 76929176 (+)
G1490016 NA other upstream 201525 76683599 ~ 76684020 (+)
LOC110493252 LOC106565788 other upstream 2476356 74388428 ~ 74432420 (+)
G1486811 NA other upstream 2906110 73978890 ~ 73979435 (+)
G1485819 NA other upstream 3603526 73281260 ~ 73282019 (+)
G1485260 NA other upstream 3760189 73122826 ~ 73125356 (+)
G1491886 NA other downstream 1121972 78008290 ~ 78008799 (+)
G1491899 NA other downstream 1132050 78018368 ~ 78019816 (+)
G1491963 NA other downstream 1302694 78189012 ~ 78190290 (+)
G1492003 NA other downstream 1366311 78252629 ~ 78253308 (+)
G1492310 NA other downstream 1884429 78770747 ~ 78775727 (+)

Expression


Co-expression Network