G1490869 (LOC106562215)


Basic Information

Item Value
gene id G1490869
gene name LOC106562215
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 77292844 ~ 77293206 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1704461
GCTGGATTAGTTTTCCCTTCAATATGTGACCATGACTCTGGATTGGTCAAGGACTGGATCTCCGTCACTCTGTTCGCAACAAACTGTTTCCATTTCTGAGCTGAGCTGCAAATCCAATGCAGCACGATCATCGAGTCTGTCCACATTTTGATctgtttttcttccattttcaGTGTGGTCATCAAGTTGTTTGCTAGTCTCGCTCCAATCACAGCTCCCATGAGCTCCAGGCGTGGCAGCGTCATTTTCTTAAGTGGGGCTACCCTGGACTTGGATGCGACTAGACTTGTTGTTTCCCTGTCTTGTGACTCACCTTGCAAGTAAGCTGCTGCACTGTAAGCCCTTTCACTTGCATCACAGAAC

Function

NR:

description
uncharacterized protein LOC110493928

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1704461 True 363 lncRNA 0.47 1 77292844 77293206

Neighbor

gene id symbol gene type direction distance location
LOC110494606 LOC106565729 coding upstream 31652 77166875 ~ 77261192 (+)
LOC110494602 LOC106565731 coding upstream 619636 76663444 ~ 76673208 (+)
gxylt2 LOC106565732 coding upstream 635777 76640347 ~ 76657067 (+)
LOC110494598 LOC106565734 coding upstream 829348 76459458 ~ 76463496 (+)
zgc:113054 LOC106565741 coding upstream 1204175 76073063 ~ 76088669 (+)
LOC110494607 LOC106565728 coding downstream 42079 77335285 ~ 77448701 (+)
LOC110494608 LOC106565727 coding downstream 259321 77552527 ~ 77771222 (+)
LOC110493259 NA coding downstream 721137 78014343 ~ 78015218 (+)
LOC110494613 NA coding downstream 735385 78028591 ~ 78029532 (+)
lbp/bpi-2 lbp/bpi-2 coding downstream 738281 78031487 ~ 78036695 (+)
G1490863 NA non-coding upstream 1017 77291594 ~ 77291827 (+)
G1490843 NA non-coding upstream 21246 77271316 ~ 77271598 (+)
G1490673 NA non-coding upstream 140426 77151960 ~ 77152418 (+)
G1490414 NA non-coding upstream 291937 76963380 ~ 77000907 (+)
G1490412 NA non-coding upstream 329641 76962535 ~ 76963203 (+)
G1491092 NA non-coding downstream 162393 77455599 ~ 77455965 (+)
G1491113 NA non-coding downstream 180586 77473792 ~ 77474040 (+)
G1491136 NA non-coding downstream 197657 77490863 ~ 77491063 (+)
G1491157 NA non-coding downstream 215199 77508405 ~ 77508852 (+)
G1491158 NA non-coding downstream 215998 77509204 ~ 77509513 (+)
G1490016 NA other upstream 608824 76683599 ~ 76684020 (+)
LOC110493252 LOC106565788 other upstream 2883655 74388428 ~ 74432420 (+)
G1486811 NA other upstream 3313409 73978890 ~ 73979435 (+)
G1485819 NA other upstream 4010825 73281260 ~ 73282019 (+)
G1485260 NA other upstream 4167488 73122826 ~ 73125356 (+)
G1491886 NA other downstream 715084 78008290 ~ 78008799 (+)
G1491899 NA other downstream 725162 78018368 ~ 78019816 (+)
G1491963 NA other downstream 895806 78189012 ~ 78190290 (+)
G1492003 NA other downstream 959423 78252629 ~ 78253308 (+)
G1492310 NA other downstream 1477541 78770747 ~ 78775727 (+)

Expression


Co-expression Network