G1491941


Basic Information

Item Value
gene id G1491941
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78124226 ~ 78125219 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1705630
GAATTGGAACTCAGACACTCGCTGCTAGAAATGAATATAAACCTTAGTAGTAAACAACAGACTCCATTTAACCGTTAAATAAACAATTCAGAAGCTTTACATTTGCAGTGATCTTAGGTAGGTAGGCTATGCTATTCTGTTGTGATAATCGATGACCTACAGTTTGCTTTCAAGTCTCAGACTAATAGGTCAATTTGGTCAAGTCGTATGTCAAATTGAAGAGAAAATAGTGTACATTCACAGAGAAGATTCTTGCGTTATGTAAAGAGCAATACATGTATTCATGCTGGTGCTGGGCATCCAGGGAACTGACGCAAACTCGTTTGAACGCAACTGGTATTATCACTGTATACAGGTATTAATCACACCCACATGGTGGCATGTACAGAGCATTGATATGCTTAAACTACTTGTCAAATTCACGGGTGCATTCACCAAGAGGGCCCAGGAATTTTATAATGTAGTCTAGTTGTCTCAACATATTTCCTTTTGAAACATTAAATCAAACTGGATATATTATTTTACACATATGTATGCATGTTGGATTGGAACctgtgctatggtcagatgacatgaaaatagagctctttggccccTCACACCAGGGGTGGGTTTGGCATCGAAAGAAGGatgcatatgcagaaaataaTCTCATACATACTCTAAAATAcagtggtggatctttgatgttatggggctattttgctagacattttagccaaaaacctggttgcctctgccaggaagtCAAAACTTGTGGATCTTCGAGCAAGacaaccccaagcacacttcaGGATCCACAAAGTAATGGTtaacagacaacaacaaaaaaaatcaacctTTGGCATtagccatctcagtctccagacttgaacaACATTAAAAACCTATTGTTTGAATGGAAGAGGGCAGTCTATAAACACAGACTAAAGGATATAAAGGATCTGGAAAaaatgtatggaggaatggtctaagatccctcccaatgtgttct

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1705630 True 994 lncRNA 0.39 1 78124226 78125219

Neighbor

gene id symbol gene type direction distance location
si:ch73-303b9.1 LOC106565721 coding upstream 38231 78084722 ~ 78085995 (+)
LOC118940495 tcbp2 coding upstream 63416 78056325 ~ 78060810 (+)
tcbp2 tcbp2 coding upstream 70934 78050969 ~ 78053292 (+)
lbp/bpi-2 lbp/bpi-2 coding upstream 87531 78031487 ~ 78036695 (+)
LOC110494613 NA coding upstream 94694 78028591 ~ 78029532 (+)
LOC110494621 LOC105017400 coding downstream 265686 78390905 ~ 78395729 (+)
odad1 LOC106565714 coding downstream 271017 78396236 ~ 78412856 (+)
LOC110494624 LOC106565712 coding downstream 297768 78422987 ~ 78425996 (+)
LOC110494627 LOC106565937 coding downstream 417232 78542451 ~ 78553518 (+)
LOC110494628 LOC106565709 coding downstream 429384 78554603 ~ 78576168 (+)
G1491939 NA non-coding upstream 1687 78122329 ~ 78122539 (+)
G1491928 NA non-coding upstream 33730 78090179 ~ 78090496 (+)
G1491925 NA non-coding upstream 37637 78086067 ~ 78086589 (+)
G1491892 NA non-coding upstream 113439 78010586 ~ 78010787 (+)
G1491889 NA non-coding upstream 114103 78009105 ~ 78010123 (+)
G1491947 NA non-coding downstream 7969 78133188 ~ 78133414 (+)
G1491948 NA non-coding downstream 8354 78133573 ~ 78133838 (+)
G1491970 NA non-coding downstream 50404 78175623 ~ 78175845 (+)
G1491972 NA non-coding downstream 52475 78177694 ~ 78177901 (+)
G1491965 LOC106565716 non-coding downstream 59817 78185036 ~ 78186007 (+)
G1491899 NA other upstream 104410 78018368 ~ 78019816 (+)
G1491886 NA other upstream 115427 78008290 ~ 78008799 (+)
G1490016 NA other upstream 1440206 76683599 ~ 76684020 (+)
LOC110493252 LOC106565788 other upstream 3715037 74388428 ~ 74432420 (+)
G1486811 NA other upstream 4144791 73978890 ~ 73979435 (+)
G1491963 NA other downstream 63793 78189012 ~ 78190290 (+)
G1492003 NA other downstream 127410 78252629 ~ 78253308 (+)
G1492310 NA other downstream 645528 78770747 ~ 78775727 (+)
LOC110493267 LOC106565976 other downstream 1204400 79321093 ~ 79336076 (+)
tusc2 tusc2 other downstream 1257426 79382417 ~ 79387551 (+)

Expression


Co-expression Network