G1491965 (LOC106565716)


Basic Information

Item Value
gene id G1491965
gene name LOC106565716
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78185036 ~ 78186007 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1705680
GCTGGGCGTTGATTGGCTGGTTACAAACGTCGCACCAGTCCTGAGTAACTGTTCTGGTCCAGAACAGGTGGCCCTCCCCTGTCTCCGCATGCACGCGCGGGTCCTCCTGCTCCTGGGAGGAAAATATTGACCAGGCCTCCTTCCGGTGTGGTTCTGTGCGCGCGAGTTTAACGACCCCTGTCCTTCCCTGTGTCAACCGCTCCATCGGTGGCCCCCCGGTATCCCCTTTGGTACCCGGCTCGGTGGTCTCACCAGGGAGGCTGTGGGATGCGCGCATCCTGACTGGCCAGTCCCGATGTGAGTTTGCGCCAGTGTGTCCGTTTGTGGGCGCGCTTGATCTGTCACACTTGGCATCTGCTATCTGTTCGTTGGCCGATGTGCTTGACCGAACATTTGTGACGGTCTTCAGTGAACTACCTCCGTCATCGGCATAGTCATTGCCGCTTGCCCTCCGTCCGCGTTGACCAGTGTCCTCCCTCGCCGCCGTCGTGTCTCTCTCCGTGTGCCCACAATCAGGCCTGCTGCTGTCGCGTTCTCTGTCGAAGCTACGTGGCACCAGCCCCGGCTGAGCCCCACTTCTCACCCCGGGATTCCCCCCTCCTACCTCGGCTGCTGCTCTTTGGTGTGCCGGGGTCAGCGGGGTTGCTGTGACTGCTGATAAAACCGACACCGAACCGCACTCCCGCTTCACCGATATCTTCCTGGTCACCATATTCTCCAGGGAGTATTTCCTCGGTAACGTTATTTTCTTCTTCCCGGTGGCCGTTATTTCCTTAAAGAAAAACTCCTGGTCTGGGCTAGGACGATGCTGTCTTGGTCCTACCACACTCACTGAAGCCATTGCCCTGCTCCTAATTCAATGCCCCAATAACGTGTGTGTATCGGTGCGTGTGCGGTGAATGTAAACTAAATTGAAGCGCGAGCCAGGCATGAAGTGTGACACATCTGCAACGACGATTCTGAAAGCGTTTA
>TU1705683
GCTGGGCGTTGATTGGCTGGTTACAAACGTCGCACCAGTCCTGAGTAACTGTTCTGGTCCAGAACAGGTGGCCCTCCCCTGTCTCCGCATGCACGCGCGGGTCCTCCTGCTCCTGGGAGGAAAATATTGACCAGGCCTCCTTCCGGTGTGGTTCTGTGCGCGCGAGTTTAACGACCCCTGTCCTTCCCTGTGTCAACCGCTCCATCGGTGGCCCCCCGGTATCCCCTTTGGTACCCGGCTCGGTGGTCTCACCAGGGAGGCTGTGGGATGCGCGCATCCTGACTGGCCAGTCCCGATGTGAGTTTGCGCCAGTGTGTCCGTTTGTGGGCGCGCTTGATCTGTCACACTTGGCATCTGCTATCTGTTCGTTGGCCGATGTGCTTGACCGAACATTTGTGACGGTCTTCAGTGAACTACCTCCGTCATCGGCATAGTCATTGCCGCTTGCCCTCCGTCCGCGTTGACCAGTGTCCTCCCTCGCCGCCGTCGTGTCTCTCTCCGTGTGCCCACAATCAGGCCTGCTGCTGTCGCGTTCTCTGTCGAAGCTACGTGGCACCAGCCCCGGCTGAGCCCCACTTCTCACCCCGGGATTCCCCCCTCCTACCTCGGCTGCTGCTCTTTGGTGTGCCGGGGTCAGCGGGGTTGCTGTGACTGCTGATAAAACCGACACCGAACCGCACTCCCGCTTCACCGATATCTTCCTGGTCACCATATTCTCCAGGGAGTATTTCCTCGGTAACGTTATTTTCTTCTTCCCGGTGGCCGTTATTTCCTTAAAGAAAAACTCCTGGTCTGGGCTAGGACGATGCTGTCTTGGTCCTACCACACTCACTGAAGCCATTGCCCTGCTCCTAATTCAATGCCCCAATAACGTGTGTGTATCGGTGCGTGTGCGGTGAATGTAAACTAAA

Function

NR:

description
uncharacterized protein LOC109898255 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1705680 False 972 lncRNA 0.57 1 78185036 78186007
TU1705683 True 911 lncRNA 0.58 1 78185036 78185946

Neighbor

gene id symbol gene type direction distance location
si:ch73-303b9.1 LOC106565721 coding upstream 99041 78084722 ~ 78085995 (+)
LOC118940495 tcbp2 coding upstream 124226 78056325 ~ 78060810 (+)
tcbp2 tcbp2 coding upstream 131744 78050969 ~ 78053292 (+)
lbp/bpi-2 lbp/bpi-2 coding upstream 148341 78031487 ~ 78036695 (+)
LOC110494613 NA coding upstream 155504 78028591 ~ 78029532 (+)
LOC110494621 LOC105017400 coding downstream 204898 78390905 ~ 78395729 (+)
odad1 LOC106565714 coding downstream 210229 78396236 ~ 78412856 (+)
LOC110494624 LOC106565712 coding downstream 236980 78422987 ~ 78425996 (+)
LOC110494627 LOC106565937 coding downstream 356444 78542451 ~ 78553518 (+)
LOC110494628 LOC106565709 coding downstream 368596 78554603 ~ 78576168 (+)
G1491972 NA non-coding upstream 7135 78177694 ~ 78177901 (+)
G1491970 NA non-coding upstream 9191 78175623 ~ 78175845 (+)
G1491948 NA non-coding upstream 51198 78133573 ~ 78133838 (+)
G1491947 NA non-coding upstream 51622 78133188 ~ 78133414 (+)
G1491941 NA non-coding upstream 59817 78124226 ~ 78125219 (+)
G1491966 NA non-coding downstream 82 78186089 ~ 78187119 (+)
G1491963 NA non-coding downstream 3005 78189012 ~ 78190290 (+)
G1491976 NA non-coding downstream 5593 78191600 ~ 78193502 (+)
G1491977 NA non-coding downstream 7606 78193613 ~ 78246889 (+)
G1491980 LOC106565715 non-coding downstream 20226 78206233 ~ 78207529 (+)
G1491899 NA other upstream 165220 78018368 ~ 78019816 (+)
G1491886 NA other upstream 176237 78008290 ~ 78008799 (+)
G1490016 NA other upstream 1501016 76683599 ~ 76684020 (+)
LOC110493252 LOC106565788 other upstream 3775847 74388428 ~ 74432420 (+)
G1486811 NA other upstream 4205601 73978890 ~ 73979435 (+)
G1492003 NA other downstream 66622 78252629 ~ 78253308 (+)
G1492310 NA other downstream 584740 78770747 ~ 78775727 (+)
LOC110493267 LOC106565976 other downstream 1143612 79321093 ~ 79336076 (+)
tusc2 tusc2 other downstream 1196638 79382417 ~ 79387551 (+)

Expression


Co-expression Network