G1491963


Basic Information

Item Value
gene id G1491963
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78189012 ~ 78190290 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1705656
CATCATCTGTTTTATAAGAAACCACATGACGCAGTGAGCTTGTTCCCCACGAGACAGAAATTCCCCCAATGGTTTGCAGAACACCCCTCTCACAAACACCCAACCACGCACACATAAGGCTCAAACACAAATACCTTTCACtttcacattattaaagtgtctttAGTTTACATCGTGATGAGTTTAGTTGTTTCTTGTTTACTCAGGAAAACCTCCTGTTTGTCAGTCTACTCTTCATCGGTCATTCTCAAACCAGTTGGCACTGAGTCAAATTGAGAGGTTGTAGATATTCAGTAATTCCACAGTGAAGTCCGGAGGGCCTTCAAATCCTCAAAACGTTaccgagagcatcttgactggctgcatcaccgcttggtaggGTATATGTACGTATGGccatacatcactggggccgagctccctgccacccaggtcctctataccaggccgtgtcagaggaaggccccaaaaatggtcaaagactccagcctctctctaccgcatggcaagcggcaacttctacccccaagccataagacttctaaacaagactgctaaatagctaatcaattggcaggttactgtctgtctgtatgtgtgtgtgctctgctAGTGTTTCTCTGCATGTCATTTCCTCATGTTTCATGTCTGAAGGCAGCTGATGTCACCCACTGTATGTTCTCCCTTGTGACTTTGTAGCCGGGAAATCATTTCAACATAAACAAATGTTTAAATCGCATTATGATTTCACACGTCCAGTGGTTCATTTATGGGTTTAATCATGGTACACACATACTAATGAGACCATATTGGCTTGGTCCTGAGCTTCCGTTTGACCCATTTCAGCAGGAGCACTGGGTAGATGAGGGAAtctatctacccctctctcttctgtctgtctgtctgtctgtctgtctgttcatctgtctgtctgtctgttcgtctgtctgttcatccgtccgtctgtctgtctgttcatccgtccgtccgtccgtctgtctgtctgttcatccgtccgtctgtctgtctgtctgtctgtctgttcatctgtctgtctgtctgtctgtctgttaatctgtctgtctgtctgagtgtgtgtgtgtggttgtctggTCACAGTCCGATGGGTCTGGGTAGATCAGGCTCCAGCATAGTTGCAGAGGTTACAGCTCCCA
>TU1705667
CATCATCTGTTTTATAAGAAACCACATGACGCAGTGAGCTTGTTCCCCACGAGACAGAAATTCCCCCAATGGTTTGCAGAACACCCCTCTCACAAACACCCAACCACGCACACATAAGGCTCAAACACAAATACCTTTCACtttcacattattaaagtgtctttAGTTTACATCGTGATGAGTTTAGTTGTTTCTTGTTTACTCAGGAAAACCTCCTGTTTGTCAGTCTACTCTTCATCGGTCATTCTCAAACCAGTTGGCACTGAGTCAAATTGAGAGGTTGTAGATATTCAGTAATTCCACAGTGAAGTCCGGAGGGCCTTCAAATCCTCAAAACGTTaccgagagcatcttgactggctgcatcaccgcttggtaggGTATATGTACGTATGGccatacatcactggggccgagctccctgccacccaggtcctctataccaggccgtgtcagaggaaggccccaaaaatggtcaaagactccagcctctctctaccgcatggcaagcggcaacttctacccccaagccataagacttctaaacaagactgctaaatagctaatcaattggcaggttactgtctgtctgtatgtgtgtgtgctctgctAGTGTTTCTCTGCATGTCATTTCCTCATGTTTCATGTCTGAAGGCAGCTGATGTCACCCACTGTATGTTCTCCCTTGTGACTTTGTAGCCGGGAAATCATTTCAACATAAACAAATGTTTAAATCGCATTATGATTTCACACGTCCAGTGGTTCATTTATGGGTTTAATCATGGTACACACATACTAATGAGACCATATTGGCTTGGTCCTGAGCTTCCGTTTGACCCATTTCAGCAGGAGCACTGGGTAGATGAGGGAAtctatctacccctctctcttctgtctgtctgtctgtctgtctgtctgttcatctgtctgtctgtctgttcgtctgtctgttcatccgtccgtctgtctgtctgttcatccgtccgtctgtctgtctgttcatccgtccgtctgtccgtctgtctgtctgttcatccgtccgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgttaatctgtctgtctgtctgagtgtgtgtgtgtggttgtctggTCACAGTCCGATGGGTCTGGGTAGATCAGGCTCCAGCATAGTTGCAGAGGTTACAGCTCCCA
>TU1705669
CATCATCTGTTTTATAAGAAACCACATGACGCAGTGAGCTTGTTCCCCACGAGACAGAAATTCCCCCAATGGTTTGCAGAACACCCCTCTCACAAACACCCAACCACGCACACATAAGGCTCAAACACAAATACCTTTCACtttcacattattaaagtgtctttAGTTTACATCGTGATGAGTTTAGTTGTTTCTTGTTTACTCAGGAAAACCTCCTGTTTGTCAGTCTACTCTTCATCGGTCATTCTCAAACCAGTTGGCACTGAGTCAAATTGAGAGGTTGTAGATATTCAGTAATTCCACAGTGAAGTCCGGAGGGCCTTCAAATCCTCAAAACGTTaccgagagcatcttgactggctgcatcaccgcttggtaggGTATATGTACGTATGGccatacatcactggggccgagctccctgccacccaggtcctctataccaggccgtgtcagaggaaggccccaaaaatggtcaaagactccagcctctctctaccgcatggcaagcggcaacttctacccccaagccataagacttctaaacaagactgctaaatagctaatcaattggcaggttactgtctgtctgtatgtgtgtgtgctctgctAGTGTTTCTCTGCATGTCATTTCCTCATGTTTCATGTCTGAAGGCAGCTGATGTCACCCACTGTATGTTCTCCCTTGTGACTTTGTAGCCGGGAAATCATTTCAACATAAACAAATGTTTAAATCGCATTATGATTTCACACGTCCAGTGGTTCATTTATGGGTTTAATCATGGTACACACATACTAATGAGACCATATTGGCTTGGTCCTGAGCTTCCGTTTGACCCATTTCAGCAGGAGCACTGGGTAGATGAGGGAAtctatctacccctctctcttctgtctgtctgtctgtctgtctgtctgttcatctgtctgtctgtctgttcgtctgtctgtctgttcatctgtctgtctgtctgtctgtctgttaatctgtctgtctgtctgagtgtgtgtgtgtggttgtctggTCACAGTCCGATGGGTCTGGGTAGATCAGGCTCCAGCATAGTTGCAGAGGTTACAGCTCCCA
>TU1705670
CATCATCTGTTTTATAAGAAACCACATGACGCAGTGAGCTTGTTCCCCACGAGACAGAAATTCCCCCAATGGTTTGCAGAACACCCCTCTCACAAACACCCAACCACGCACACATAAGGCTCAAACACAAATACCTTTCACtttcacattattaaagtgtctttAGTTTACATCGTGATGAGTTTAGTTGTTTCTTGTTTACTCAGGAAAACCTCCTGTTTGTCAGTCTACTCTTCATCGGTCATTCTCAAACCAGTTGGCACTGAGTCAAATTGAGAGGTTGTAGATATTCAGTAATTCCACAGTGAAGTCCGGAGGGCCTTCAAATCCTCAAAACGTTaccgagagcatcttgactggctgcatcaccgcttggtaggGTATATGTACGTATGGccatacatcactggggccgagctccctgccacccaggtcctctataccaggccgtgtcagaggaaggccccaaaaatggtcaaagactccagcctctctctaccgcatggcaagcggcaacttctacccccaagccataagacttctaaacaagactgctaaatagctaatcaattggcaggttactgtctgtctgtatgtgtgtgtgctctgctAGTGTTTCTCTGCATGTCATTTCCTCATGTTTCATGTCTGAAGGCAGCTGATGTCACCCACTGTATGTTCTCCCTTGTGACTTTGTAGCCGGGAAATCATTTCAACATAAACAAATGTTTAAATCGCATTATGATTTCACACGTCCAGTGGTTCATTTATGGGTTTAATCATGGTACACACATACTAATGAGACCATATTGGCTTGGTCCTGAGCTTCCGTTTGACCCATTTCAGCAGGAGCACTGGGTAGATGAGGGAAtctatctacccctctctcttctgtctgtctgtctgtctgtctgtctgttcatctgtctgtctgtctgttcgtctgtctgttcatccgtccgtctgtctgtctgttcatccgtccgtccgtccgtctgtctgtctgttcatccgtccgtctgtctgtctgtctgtctgtctgttcatctgtctgtctgtctgtctgtctgttaatctgtctgtctgtctgagtgtgtgtgtgtggttgtctggTCACAGTCCGATGGGTCTGGGTAGATCAGGCTCCAGCATAGTTGCAGAGGTTACAGCTCCCA
>TU1705671
CATCATCTGTTTTATAAGAAACCACATGACGCAGTGAGCTTGTTCCCCACGAGACAGAAATTCCCCCAATGGTTTGCAGAACACCCCTCTCACAAACACCCAACCACGCACACATAAGGCTCAAACACAAATACCTTTCACtttcacattattaaagtgtctttAGTTTACATCGTGATGAGTTTAGTTGTTTCTTGTTTACTCAGGAAAACCTCCTGTTTGTCAGTCTACTCTTCATCGGTCATTCTCAAACCAGTTGGCACTGAGTCAAATTGAGAGGTTGTAGATATTCAGTAATTCCACAGTGAAGTCCGGAGGGCCTTCAAATCCTCAAAACGTTaccgagagcatcttgactggctgcatcaccgcttggtaggGTATATGTACGTATGGccatacatcactggggccgagctccctgccacccaggtcctctataccaggccgtgtcagaggaaggccccaaaaatggtcaaagactccagcctctctctaccgcatggcaagcggcaacttctacccccaagccataagacttctaaacaagactgctaaatagctaatcaattggcaggttactgtctgtctgtatgtgtgtgtgctctgctAGTGTTTCTCTGCATGTCATTTCCTCATGTTTCATGTCTGAAGGCAGCTGATGTCACCCACTGTATGTTCTCCCTTGTGACTTTGTAGCCGGGAAATCATTTCAACATAAACAAATGTTTAAATCGCATTATGATTTCACACGTCCAGTGGTTCATTTATGGGTTTAATCATGGTACACACATACTAATGAGACCATATTGGCTTGGTCCTGAGCTTCCGTTTGACCCATTTCAGCAGGAGCACTGGGTAGATGAGGGAAtctatctacccctctctcttctgtctgtctgtctgtctgtctgtctgttcatctgtctgtctgtctgttcgtctgtctgttcatccgtccgtctgtctgtctgttcatccgtccgtccgtccgtctgtctgtctgttcatccgtccgtctgtctgtctgttcatccgtccgtctgtctgtctgttcatctgtctgtctgtctgtctgtctgttaatctgtctgtctgtctgagtgtgtgtgtgtggttgtctggTCACAGTCCGATGGGTCTGGGTAGATCAGGCTCCAGCATAGTTGCAGAGGTTACAGCTCCCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1705656 False 1175 lncRNA 0.47 2 78189012 78190290
TU1705667 False 1219 TUCP 0.47 3 78189012 78190290
TU1705669 False 1087 TUCP 0.46 2 78189012 78190290
TU1705670 False 1175 lncRNA 0.47 3 78189012 78190290
TU1705671 True 1187 lncRNA 0.47 3 78189012 78190290

Neighbor

gene id symbol gene type direction distance location
si:ch73-303b9.1 LOC106565721 coding upstream 103017 78084722 ~ 78085995 (+)
LOC118940495 tcbp2 coding upstream 128202 78056325 ~ 78060810 (+)
tcbp2 tcbp2 coding upstream 135720 78050969 ~ 78053292 (+)
lbp/bpi-2 lbp/bpi-2 coding upstream 152317 78031487 ~ 78036695 (+)
LOC110494613 NA coding upstream 159480 78028591 ~ 78029532 (+)
LOC110494621 LOC105017400 coding downstream 200615 78390905 ~ 78395729 (+)
odad1 LOC106565714 coding downstream 205946 78396236 ~ 78412856 (+)
LOC110494624 LOC106565712 coding downstream 232697 78422987 ~ 78425996 (+)
LOC110494627 LOC106565937 coding downstream 352161 78542451 ~ 78553518 (+)
LOC110494628 LOC106565709 coding downstream 364313 78554603 ~ 78576168 (+)
G1491966 NA non-coding upstream 1893 78186089 ~ 78187119 (+)
G1491965 LOC106565716 non-coding upstream 3005 78185036 ~ 78186007 (+)
G1491972 NA non-coding upstream 11111 78177694 ~ 78177901 (+)
G1491970 NA non-coding upstream 13167 78175623 ~ 78175845 (+)
G1491948 NA non-coding upstream 55174 78133573 ~ 78133838 (+)
G1491976 NA non-coding downstream 1310 78191600 ~ 78193502 (+)
G1491977 NA non-coding downstream 3323 78193613 ~ 78246889 (+)
G1491980 LOC106565715 non-coding downstream 15943 78206233 ~ 78207529 (+)
G1491997 NA non-coding downstream 50962 78241252 ~ 78242463 (+)
G1492000 NA non-coding downstream 57345 78247635 ~ 78248174 (+)
G1491899 NA other upstream 169196 78018368 ~ 78019816 (+)
G1491886 NA other upstream 180213 78008290 ~ 78008799 (+)
G1490016 NA other upstream 1504992 76683599 ~ 76684020 (+)
LOC110493252 LOC106565788 other upstream 3779823 74388428 ~ 74432420 (+)
G1486811 NA other upstream 4209577 73978890 ~ 73979435 (+)
G1492003 NA other downstream 62339 78252629 ~ 78253308 (+)
G1492310 NA other downstream 580457 78770747 ~ 78775727 (+)
LOC110493267 LOC106565976 other downstream 1139329 79321093 ~ 79336076 (+)
tusc2 tusc2 other downstream 1192355 79382417 ~ 79387551 (+)
G1495346 NA other downstream 3103150 81293440 ~ 81293926 (+)

Expression


Co-expression Network