G1491976


Basic Information

Item Value
gene id G1491976
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78191600 ~ 78193502 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1705702
ACACACAAATAAAGAACACTGAAAACACACAAATAaagaacactgacaacacacacataaagaacactgacaacacacaaataaagaacactgacaacacacaaataaagaacactgacaacacacacataaagaacactgacaacacacacataaagaacactgacaacacacaaataaagaacactgacaacacacaaataaagaacactgacaacactgacaacacacaaataaagaacactgacaacacacaaataaagaacactgacaacacacaaataaagaacactgacaacacacaaataaagaacactgacaacacacacatgaagaacactgacaacacacacatgaagaacactgacaacacacacatgaagaacactgacaacacacacataaagaacactgacaacactgacaacacacaaataaagaacactgacaacacacacataaagaacactgacaacacacacataaagaacactgacaacacacacataaagaacactgacaacacacacaaagaacactgacaacacacacataaagaacactaacacacacataaagaacactgacaacacacaaataaagaacactgacaacacacacataaagaacactgacaacacacacataaagaacactgacaacacacacataaagaacactaacaacacacaaataaagaacactgacaacacacaaataaagaacactgacaacacacaaataaagaacactgacaacacacacataaagaacactgacaacacacaaataaagaacactaacaacacacaaataaagaacactgacaacacacaaataaagaacactgacaacacacaaataaagaacactgacaacacacaaataaagaacactgacaacacacaaataaagaacactgacaacacacaaataaagaacactgacaacacacaaataaagaacactgacaacacacaaataaagaacactgacaacacacacataaagaacactgacaacacacaaataaagaacactgacaacacacaaataaagaacactgacaacacacaaataaagaacactgacaacacacacataaagaacactgacaacacacacataaagaacactaacaacacacaaataaagaacactgacaacacacacataaagaacactgacaacacacaaataaagaacactgacaacacacaaacaaagaacactgac
>TU1705704
ACACACAAATAAAGAACACTGAAAACACACAAATAaagaacactgacaacacacacataaagaacactgacaacacacaaataaagaacactgacaacacacaaataaagaacactgacaacacacacataaagaacactgacaacacacacataaagaacactgacaacacacaaataaagaacactgacaacacacacataaagaacactgacaacacacaaataaagaacactgacaacacacacataaagaacactgacaacacacacataaagaacactgacaacacacacataaagaacactaacaacacacaaataaagaacactgacaacacacaaataaagaacactgacaacacacaaataaagaacactgacaacacacacataaagaacactgacaacacacaaataaagaacactaacaacacacaaataaagaacactgacaacacacaaataaagaacactgacaacacacaaataaagaacactgacaacacacaaataaagaacactgacaacacacaaataaagaacactgacaacacacaaataaagaacactgacaacacacaaataaagaacactgacaacacacaaataaagaacactgacaacacacacataaagaacactgacaacacacaaataaagaacactgacaacacacaaataaagaacactgacaacacacaaataaagaacactgacaacacacacataaagaacactgacaacacacacataaagaacactaacaacacacaaataaagaacactgacaacacacacataaagaacactgacaacacacaaataaagaacactgacaacacacaaacaaagaacactgac
>TU1705705
ACACACAAATAAAGAACACTGAAAACACACAAATAaagaacactgacaacacacacataaagaacactgacaacacacaaataaagaacactgacaacacacaaataaagaacactgacaacacacacataaagaacactgacaacacacacataaagaacactgacaacacacaaataaagaacactgacaacacacaaataaagaacactgacaacacacacataaagaacactgacaacacacaaataaagaacactgacaacacacaaataaagaacactgacaacacacaaataaagaacactgacaacacacaaataaagaacactgacaacacacaaataaagaacactgacaacacacacaaagaacactgacaacacacacataaagaacactaacacacacat

Function

NR:

description
PREDICTED: voltage-dependent T-type calcium channel subunit alpha-1H isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1705702 False 1236 lncRNA 0.35 4 78191600 78193502
TU1705704 False 863 lncRNA 0.34 3 78191600 78193502
TU1705705 True 413 lncRNA 0.35 3 78191600 78192486

Neighbor

gene id symbol gene type direction distance location
si:ch73-303b9.1 LOC106565721 coding upstream 105605 78084722 ~ 78085995 (+)
LOC118940495 tcbp2 coding upstream 130790 78056325 ~ 78060810 (+)
tcbp2 tcbp2 coding upstream 138308 78050969 ~ 78053292 (+)
lbp/bpi-2 lbp/bpi-2 coding upstream 154905 78031487 ~ 78036695 (+)
LOC110494613 NA coding upstream 162068 78028591 ~ 78029532 (+)
LOC110494621 LOC105017400 coding downstream 197403 78390905 ~ 78395729 (+)
odad1 LOC106565714 coding downstream 202734 78396236 ~ 78412856 (+)
LOC110494624 LOC106565712 coding downstream 229485 78422987 ~ 78425996 (+)
LOC110494627 LOC106565937 coding downstream 348949 78542451 ~ 78553518 (+)
LOC110494628 LOC106565709 coding downstream 361101 78554603 ~ 78576168 (+)
G1491963 NA non-coding upstream 1310 78189012 ~ 78190290 (+)
G1491966 NA non-coding upstream 4481 78186089 ~ 78187119 (+)
G1491965 LOC106565716 non-coding upstream 5593 78185036 ~ 78186007 (+)
G1491972 NA non-coding upstream 13699 78177694 ~ 78177901 (+)
G1491970 NA non-coding upstream 15755 78175623 ~ 78175845 (+)
G1491977 NA non-coding downstream 111 78193613 ~ 78246889 (+)
G1491980 LOC106565715 non-coding downstream 12731 78206233 ~ 78207529 (+)
G1491997 NA non-coding downstream 47750 78241252 ~ 78242463 (+)
G1492000 NA non-coding downstream 54133 78247635 ~ 78248174 (+)
G1492001 NA non-coding downstream 56967 78250469 ~ 78250970 (+)
G1491899 NA other upstream 171784 78018368 ~ 78019816 (+)
G1491886 NA other upstream 182801 78008290 ~ 78008799 (+)
G1490016 NA other upstream 1507580 76683599 ~ 76684020 (+)
LOC110493252 LOC106565788 other upstream 3782411 74388428 ~ 74432420 (+)
G1492003 NA other downstream 59127 78252629 ~ 78253308 (+)
G1492310 NA other downstream 577245 78770747 ~ 78775727 (+)
LOC110493267 LOC106565976 other downstream 1136117 79321093 ~ 79336076 (+)
tusc2 tusc2 other downstream 1189143 79382417 ~ 79387551 (+)
G1495346 NA other downstream 3099938 81293440 ~ 81293926 (+)

Expression


Co-expression Network