G1491977


Basic Information

Item Value
gene id G1491977
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78193613 ~ 78246889 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1705706
ctgctCCAGGTCGATGCGGAGTCCAGCAGGTCTCGATATTTCTGTAGACATTCCTCTCTAAACAGAACCTTCACACGCTTTATATGGGACGACAGGTGGATCCTAGccgagacagagagggatatgatacacacacacacacaccacatttaTCTCAGAAAACAATGCTGACATACTCACTTCTCAAACTTGTGTATCTGCTCATCATTGTAGGCAAGCTCTAGAACAATCACAAGGGAGACATTTATTAAACACTCAAAACACAGGAGGCACacgttagacacacacacacacacccacacacacacacacttccagtcAGTCGGTCCTTGCGGTACTGTTGGTGGATGGCCATGATCTTCTCCAGGAGGAACTCCATCTTCTGGATGCTGT
>TU1705707
ctgctCCAGGTCGATGCGGAGTCCAGCAGGTCTCGATATTTCTGTAGACATTCCTCTCTAAACAGAACCTTCACACGCTTTATATGGGACGACAGGTGGATCCTAGccgagacagagagggatatgatacacacacacacacaccacatttaTCTCAGAAAACAATGCTGACATACTCACTTCTCAAACTTGTGTATCTGCTCATCATTGTAGGCAAGCTCTAGAACAATCACAAGGGAGACATTTATTAAACACTCAAAACACAGGAGGCACacgttagacacacacacacgcacacacgcacacacgcacgcacgcacgcacgcacacacacacacaatgcaatatTAGAATTAGTATGTACCCATAAACACACCCTTGCAGCAGTCAAATCGACCTTAGATCTTACTATTGAATCTCCcaatggtatgtgtgtgtgtttctttaccACACCTACCTGGCAAGGCAACAGTCAGTCTT
>TU1705709
ctgctCCAGGTCGATGCGGAGTCCAGCAGGTCTCGATATTTCTGTAGACATTCCTCTCTAAACAGAACCTTCACACGCTTTATATGGGACGACAGGTGGATCCTAGccgagacagagagggatatgatacacacacacacacaccacatttaTCTCAGAAAACAATGCTGACATACTCACTTCTCAAACTTGTGTATCTGCTCATCATTGTAGGCAAGCTCTAGAACAATCACAAGGGAGACATTTATTAAACACTCAAAACACAGGAGGCACacgttacacacacccacacacacacccacacacacacacacttccagtcAGTCGGTCCTTGCGGTACTGTTGGTGGATGGCCATGATCTTCTCCAGGAGGAACTCCATCTTCTGGATGCTGT

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1705706 False 393 lncRNA 0.47 2 78193613 78194049
TU1705707 False 480 lncRNA 0.45 2 78193613 78246889
TU1705709 True 395 lncRNA 0.47 2 78193613 78194049

Neighbor

gene id symbol gene type direction distance location
si:ch73-303b9.1 LOC106565721 coding upstream 107618 78084722 ~ 78085995 (+)
LOC118940495 tcbp2 coding upstream 132803 78056325 ~ 78060810 (+)
tcbp2 tcbp2 coding upstream 140321 78050969 ~ 78053292 (+)
lbp/bpi-2 lbp/bpi-2 coding upstream 156918 78031487 ~ 78036695 (+)
LOC110494613 NA coding upstream 164081 78028591 ~ 78029532 (+)
LOC110494621 LOC105017400 coding downstream 144016 78390905 ~ 78395729 (+)
odad1 LOC106565714 coding downstream 149347 78396236 ~ 78412856 (+)
LOC110494624 LOC106565712 coding downstream 176098 78422987 ~ 78425996 (+)
LOC110494627 LOC106565937 coding downstream 295562 78542451 ~ 78553518 (+)
LOC110494628 LOC106565709 coding downstream 307714 78554603 ~ 78576168 (+)
G1491976 NA non-coding upstream 111 78191600 ~ 78193502 (+)
G1491963 NA non-coding upstream 3323 78189012 ~ 78190290 (+)
G1491966 NA non-coding upstream 6494 78186089 ~ 78187119 (+)
G1491965 LOC106565716 non-coding upstream 7606 78185036 ~ 78186007 (+)
G1491972 NA non-coding upstream 15712 78177694 ~ 78177901 (+)
G1492000 NA non-coding downstream 746 78247635 ~ 78248174 (+)
G1492001 NA non-coding downstream 3580 78250469 ~ 78250970 (+)
G1492002 LOC106565713 non-coding downstream 4355 78251244 ~ 78251462 (+)
G1492005 NA non-coding downstream 8247 78255136 ~ 78255347 (+)
G1492007 LOC106565713 non-coding downstream 11144 78258033 ~ 78258288 (+)
G1491899 NA other upstream 173797 78018368 ~ 78019816 (+)
G1491886 NA other upstream 184814 78008290 ~ 78008799 (+)
G1490016 NA other upstream 1509593 76683599 ~ 76684020 (+)
LOC110493252 LOC106565788 other upstream 3784424 74388428 ~ 74432420 (+)
G1492003 NA other downstream 5740 78252629 ~ 78253308 (+)
G1492310 NA other downstream 523858 78770747 ~ 78775727 (+)
LOC110493267 LOC106565976 other downstream 1082730 79321093 ~ 79336076 (+)
tusc2 tusc2 other downstream 1135756 79382417 ~ 79387551 (+)
G1495346 NA other downstream 3046551 81293440 ~ 81293926 (+)

Expression


Co-expression Network