G1491980 (LOC106565715)


Basic Information

Item Value
gene id G1491980
gene name LOC106565715
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78206233 ~ 78207529 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1705712
TCCTCTGTTCCGTAGATGGAGACAAACGTCTCTTCATTCTCTAGTTTTCTGGCTGCTCCGAAGTCTGTTAGCTTATAGACAGACCTCCCGTCCTCTCCCACCTGACGCATGATGTTCCCAGGCTTAATGTCCCGGTGCACCACCCCGTTCTCACGCAGATGGTTCATCCCTTGCAccacacactgtaGTACAATGAGGAACTCTGTCTCAGGCAGACCGAAGGTGTTCTCTGGCTCTTCCAGCAGACTGAGCAGACTGCCTCCTGAACAATACTCCATCACCAACACCTTTTGTTTATTGCtcagctcctccacagAGAAGAGCTTGACGATGTTGTTGTGGTTGAGTCTCCTGAGCATTTCAAACTCTCTCATCTGAACCTCGTACGGACGGCTGTAGCTCAAAGGGTTAAACACCTTCACCGCAACCTGCTCCCCTGTCCtctacacacggacacacacacacacggacacacacagacacacacacacggacacgcacggacacacacacacacacagacacacacacacggacacgcacggacacacacacacacggacacacacagacacacacacacggacacgcacggacacacacacacacagacacacacacacatacacacacacagacacacacacacggacacgcacggacacacacacacacacagacacacacacacacacacacacacggacacgcacggacacacacacacaca

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1705712 True 730 lncRNA 0.53 5 78206233 78207529

Neighbor

gene id symbol gene type direction distance location
si:ch73-303b9.1 LOC106565721 coding upstream 120238 78084722 ~ 78085995 (+)
LOC118940495 tcbp2 coding upstream 145423 78056325 ~ 78060810 (+)
tcbp2 tcbp2 coding upstream 152941 78050969 ~ 78053292 (+)
lbp/bpi-2 lbp/bpi-2 coding upstream 169538 78031487 ~ 78036695 (+)
LOC110494613 NA coding upstream 176701 78028591 ~ 78029532 (+)
LOC110494621 LOC105017400 coding downstream 183376 78390905 ~ 78395729 (+)
odad1 LOC106565714 coding downstream 188707 78396236 ~ 78412856 (+)
LOC110494624 LOC106565712 coding downstream 215458 78422987 ~ 78425996 (+)
LOC110494627 LOC106565937 coding downstream 334922 78542451 ~ 78553518 (+)
LOC110494628 LOC106565709 coding downstream 347074 78554603 ~ 78576168 (+)
G1491976 NA non-coding upstream 12731 78191600 ~ 78193502 (+)
G1491963 NA non-coding upstream 15943 78189012 ~ 78190290 (+)
G1491966 NA non-coding upstream 19114 78186089 ~ 78187119 (+)
G1491965 LOC106565716 non-coding upstream 20226 78185036 ~ 78186007 (+)
G1491972 NA non-coding upstream 28332 78177694 ~ 78177901 (+)
G1491997 NA non-coding downstream 33723 78241252 ~ 78242463 (+)
G1492000 NA non-coding downstream 40106 78247635 ~ 78248174 (+)
G1492001 NA non-coding downstream 42940 78250469 ~ 78250970 (+)
G1492002 LOC106565713 non-coding downstream 43715 78251244 ~ 78251462 (+)
G1492005 NA non-coding downstream 47607 78255136 ~ 78255347 (+)
G1491899 NA other upstream 186417 78018368 ~ 78019816 (+)
G1491886 NA other upstream 197434 78008290 ~ 78008799 (+)
G1490016 NA other upstream 1522213 76683599 ~ 76684020 (+)
LOC110493252 LOC106565788 other upstream 3797044 74388428 ~ 74432420 (+)
G1492003 NA other downstream 45100 78252629 ~ 78253308 (+)
G1492310 NA other downstream 563218 78770747 ~ 78775727 (+)
LOC110493267 LOC106565976 other downstream 1122090 79321093 ~ 79336076 (+)
tusc2 tusc2 other downstream 1175116 79382417 ~ 79387551 (+)
G1495346 NA other downstream 3085911 81293440 ~ 81293926 (+)

Expression


Co-expression Network