G1492002 (LOC106565713)


Basic Information

Item Value
gene id G1492002
gene name LOC106565713
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78251244 ~ 78251462 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1705740
cGTGTCTCCCATGTGTGACTGGAAGTCGAAGCGCATGGGGGGACAGAAGACGTTGTTGTAGGTTTCCATCAGTCTCTGCTTGTCCCCGTTGGGCTCCAGGCTCTCTGCTGCCCCCTCCAGGCCCTCCAGACCGCTGTGTTTAGATGCCTCCACGTTCATCTCGGCTGACAGGTAGGTCCGCAACGCACGGTGGAGACTGGCATGGTAGCCCAGGTCACA

Function

NR:

description
LOW QUALITY PROTEIN: SLIT-ROBO Rho GTPase-activating protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1705740 True 219 lncRNA 0.60 1 78251244 78251462

Neighbor

gene id symbol gene type direction distance location
si:ch73-303b9.1 LOC106565721 coding upstream 165249 78084722 ~ 78085995 (+)
LOC118940495 tcbp2 coding upstream 190434 78056325 ~ 78060810 (+)
tcbp2 tcbp2 coding upstream 197952 78050969 ~ 78053292 (+)
lbp/bpi-2 lbp/bpi-2 coding upstream 214549 78031487 ~ 78036695 (+)
LOC110494613 NA coding upstream 221712 78028591 ~ 78029532 (+)
LOC110494621 LOC105017400 coding downstream 139443 78390905 ~ 78395729 (+)
odad1 LOC106565714 coding downstream 144774 78396236 ~ 78412856 (+)
LOC110494624 LOC106565712 coding downstream 171525 78422987 ~ 78425996 (+)
LOC110494627 LOC106565937 coding downstream 290989 78542451 ~ 78553518 (+)
LOC110494628 LOC106565709 coding downstream 303141 78554603 ~ 78576168 (+)
G1492001 NA non-coding upstream 274 78250469 ~ 78250970 (+)
G1492000 NA non-coding upstream 3070 78247635 ~ 78248174 (+)
G1491977 NA non-coding upstream 4355 78193613 ~ 78246889 (+)
G1491997 NA non-coding upstream 8781 78241252 ~ 78242463 (+)
G1491980 LOC106565715 non-coding upstream 43715 78206233 ~ 78207529 (+)
G1492005 NA non-coding downstream 3674 78255136 ~ 78255347 (+)
G1492007 LOC106565713 non-coding downstream 6571 78258033 ~ 78258288 (+)
G1492009 NA non-coding downstream 9659 78261121 ~ 78261330 (+)
G1492080 NA non-coding downstream 131354 78382816 ~ 78383045 (+)
G1492083 NA non-coding downstream 135437 78386899 ~ 78387434 (+)
G1491963 NA other upstream 60954 78189012 ~ 78190290 (+)
G1491899 NA other upstream 231428 78018368 ~ 78019816 (+)
G1491886 NA other upstream 242445 78008290 ~ 78008799 (+)
G1490016 NA other upstream 1567224 76683599 ~ 76684020 (+)
LOC110493252 LOC106565788 other upstream 3842055 74388428 ~ 74432420 (+)
G1492003 NA other downstream 1167 78252629 ~ 78253308 (+)
G1492310 NA other downstream 519285 78770747 ~ 78775727 (+)
LOC110493267 LOC106565976 other downstream 1078157 79321093 ~ 79336076 (+)
tusc2 tusc2 other downstream 1131183 79382417 ~ 79387551 (+)
G1495346 NA other downstream 3041978 81293440 ~ 81293926 (+)

Expression


Co-expression Network