G1492219


Basic Information

Item Value
gene id G1492219
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78624718 ~ 78630403 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1705986
CTCACTGAGACCAAGGTAACACACTAGGCACAACTCACTGAGACCAAGGTAACACACTAGGCACTACTCACTGAGACCAAGGTAACACACTAGGCACTACTCACTGAGACCAAGGTAACACACTAGGCACTACTCACTGAGACCAAGGTAACACACTAGGCACTACTCACTGAGACCAAGGTAACACACTAGGCACAACTCACTGAGACCAAGGTAACACACTAGGCACTACTCACTGAGACCAAGGTAACACACTAGGCACTACTCACTGAGACCAAGGTAACACACTAGGCACTACTCACTGAGACCAAGGTAACACACTAAGCACTACTCACTGAGACCAAGGAAACACACCAAGCACAAACATTCACTTAGACCAAGATaacttagagagcctttttaccCATTAGAGACCAAGTTAATGGTCGAgttgttctgtctgtctttcatcGTATCTCTATCTCACCCTCCACCTGAGTCTGTACTGAACTGATTGGTTTATTGAGCATCTCTTTAATCTATACACCCTGTTTTAATCAGCGGAACAAGAGCAGTCACTCAATACAACAGATATTCCTCAATCACCTTTTCTGTCTCATCTCTTCCCTTTTTGATGACTTTGAGATTCACAAAGGCATGGCTGTCTGACAGAGTGAGTGTGGGGCGTCATTTGGAAGGGTGTCGTTCTTTCCGCTGTTTACATGCTGGCTGTTCCCTGGCACGCCAACCCAGCCAGCGCCCTCCCGTCTTCCTGTCCTGTCTGCAGGACTTTACTTAAAATGTCTCTGGCCCAGCAAGGCAGACCTGCCTGCTTCCACTGCCATTCTGCCGTCACCTTTAGCTGACTGCCTGTTGGAGCTCTTCTAGCCCCTCCATTATAAATCAGTCCATCTCATTAGGTTTGCATCCATTTGTCCGAAGAGATGTGCGTTGCCTGGAAGAGGCCCATAGGGGAACTAAATcgatctctctgcctctccaatACATTTAGGTTGATGACAATGAAATGCTCTGTTGTTCTCCTGCCCTTCCTGCTTGACCACACACAGAATCCAAATAAGAATTGATTTGTAGGATCTGATCAAAGCACCCACAAATTATGTTATGTAATCCTGAAATGGGAGACTGCCCACCTCAAACACGCATAATcgtctctacccctctcccctgGAACATGAAGGTGTTGAAACTGAAACTTTGAGTAGGGTGGTGTGAGGCTGCCAATACCCTTGTTTTGGTTTGACTTAAATGTCCCCCAACGCTGCTGTTTGTCACTTAATTGGTTTATATTGGTTCTGGTGCTCTAGTTTAGTTCAAGTCCTGGGCCCATGTGTTTAGGGGCATCCCCTGCCCTGTCTGAAGAGCAGACGTTGTCTGATTCTCTGGCCGTGGGGGTTTGTCTGATTTAACGAGCTGCTTCTCTGAGACTCAGACTCAATAAAATTGTTCTTCCTGTAGGCTTAATATGAGCTTTAAATATCCACCCTGCCATAGCCATAACACCCTGCTGGAGAAGACTGGCACATGGTTACTGCATCGCTGCAGGCCTCATCagtcctgtcctcctctcactGTCACACTCACATCCCACTCCTGCCCTGCTCTGTATTGGAGATAAATGATCTTAATAGGCTTAAGGTTCCCAGCAGCACAGAGAGAATATCTGCCTGCTTCTAGGTTCCTACAGGAACAGGCATGCTGCTGGAGTGAAATTGATTTATGGCAGGCAGTAGCAATAAAACCCAGATTCTGATGCTGCTACCCCTGCTCCCTGGTGTTCCCCTGTGATGGAGAGGAGTAGAGACTACTAGAACAGAGCGAATGTTTCCTTTGTACAGACAGACAAAAGCCCTGCGTGAGAAGCTGCTCCCTCTCCAGTTGTTACTGGACTGAGCCTCTTGGATCTCTCTTTGTTCTGTGTctctgctgctactgttgctgtTAGCATTGGAGATTATTAATTTCCTCTTCAAGTCCAGCGCCCTCCTTGATTTCCCCACGATTTCTCCTTTTTCTCTCATCAAGAGCACTGCTCTTCCAATAATAGCATCACTGACTATCCGCTGGCCTTGTAAATGTTGCCTTCAACACACAGCTTGTCTGTCCCCAGCCGACCCCACAGCATCAGCCTTTTAAGCATGCTTTCGATCTCACAAGCAGTACCACTATTAAAACAGCACAATGTGACTAACTGTGCTCTAGGGCCTCTTCCACTGTCCCAACCAACCAGTGAGGCTGAGCTTTGCCCTATTCTACTCCTAATGCTCTCTATATAGGCCGTTCTTATGATAGAACATTTTGTATTGATTTAATGTTGGATGATCTATAACAGCAGATGGGGATTGTCCCTAGAAGCCCTGCCTATGACTCTTAGACAGATTTTTTTCAGTCAATAAATTGACATGATGTTAGGTGctaaaaaggtttttagaaaccgagtggttcgagccctgaatgctgattggctgaagggtgtggtatatcagactgtataccacaggtatgatgACACaactttttactgttctaattactatggttaccagtttataataacaataaggcacctcaggagTTTCtagtatatgaccaatatacaacggctaagggctgtatccagacaCTGCGTTGCGTCGTACGTAAGAACAGTCCACAGCTGTGGTATGTTAGCCGTATACCATACCCCTTGTTgtgcattcagggctcaaaccccCCAGCTGTTAAGATGGAGCCGAAGatgatggctgacgttttacatgctcgtaaccaattgtgcaatttaaaaataaataaaaaagtcaaacttattttgtacataatgttgctgctactgtctcttatgaccgaaaataacttatGGACATCAGATCtgggattactcaccacggacttgAAGAaggtttttcctttaacgagtctgacgagaaaGATATACAgctctcccgggaacaggcccatatccccgtcatttgcgtgaagaaaagacggaggaaaaggggacgcagatcaggctgccttttgagaatctgtaggagagccaggtaactcccactgccatcaattctacttgctaacatgcaatcattggagaatAAAATTGATTATTTATGAATCATCCTACCTATGGGACATATAAGATATTATAATTCTTAGTTTCACCAAGTTGTGGCTGAACTACGACACGGATCATTTAGAGCTGGAGGGATTTTCAATGCACGGCggaacagagaagctacgtctggtaagatgaggggtgggggtCTGTCTTTTTGTCTAACAGCTGGtgcgtgatgtctaatattaaagaagtctcgaggtattgctcgcctgaggtagagtacattttgataagttgtagaccacactatttaccaggAGATTTcttatctatattattcgtagccatctatttaccaccacagaacgaagctggcactaagaccgcactcaaccaactctaaggccaaaagcaaacaagaaaatgctcacccagaggcagcgctcctagtggccggggactttaatgcaggcaaatttATATCacttttaccaaatttttaccaagaaaattctagaccacctttactccacacacagagatgcatacaaagctctctccTGCagtccatttggcaaatctgaccataattctatccccctgattcctgcttacaagcaaaaactaaagcaggaagtaccagtgactcgctcaatacggaagtggtcagatgccACGGATGCTTCACTACAGGACTtttttgttagcacagactggaatatgttctgggattcatccaatggcattgaggagtataccacctcagtcatcggcttcatcaataagtgcatcgacgatgtcgtccccacagttgACCGTCCGTACAAATCCCAACCAttagccatggattacaggtgacatccgcatcgagctaaaggctagagctgccgctttcaaggagcgggacactgatccggacgcctataagaaatcccgctaatACCCTCAGACGAATAAttaaacaagcaaagcatcaatacaggattaagattgaatcctactacacagactctgacgctcgttggatgtggcagggcttgaaaactattacggactacgaagggaaacccagacgcgagctgcccagtgacgtgagcctaccagacaagctaaatgccttttatgctcgcttcaaggcaagcagcACTGAAgaatgcacgagagcaccagctgttctggatgactgtgtgataacaaaCTCGGTAGCCGAGTAAGACTTTTTAAACAggccaacattcacaaagctgtggggccagatggattaccaggacgtgtactcaaagcatgtgaggaccaactggtaagtgtcttcactgacattttcaacctcttcctgactgagtctgtaatacctacatgtttcaggcagaacaccatagtccctgtgcccaaggaagcgaaggtaacctgcctaaatgattaccgtgccgtagcactcacattggtagccatgaaatgctttgaaaggctggtcaaggctcacatcaacagcatcctcccggataccctagacccactccaattcgcataccgccccaacagatccacagatgacgcagtctccattgcactccacactgcccttttccacctggtcaaaggaacacctatgtgagaatgctgttcattgacgacagctcagtgttcaacaccagagtgcccacgaagctcatcactaagctaaggaccctgggacaaaacaactccctctgcaacttgaaaattgacttcctgacaggccaccccaggtggtaagggtaggcaacaacacgtctgccacatcCCCTCTTGTACtcgctgttcacccacgactgcgtggccaaacacgactccaacaccattaagtttgctgacgacacaagtggtaggcctgatcaccgacaacgatttgacagcctaaagggaggtcagagaactggcagtgtggtgccagtaaaacaatctctccctcaatgtgagcaagacaaaggggttgatcgtggactacaggaaaaggcgggccgaacaggccccatttaacatcaacggggctgtagttgaGTGGGTCGAGAGCTCATCACCAACagtctatcatggtccaaacacaccaaggcagtcgtgaagacggcccgacaaaaccttttccctctcaggagactgaaaagatttggcatgggtcaccggatcctcaaaaggttctacagctgcaccatcgagatcatcctgaccgattgcatcaccgcatggtatggcaactgctcggtatctgaccgtaaggcgcgaCAGcgggtagtgcaaacggcccagtacatcactggggccaagcttcctgccatccaggacctatataataggcggtgtcagagggaagcccataaaattgtcagagactccagtcacacaagtcatagactgtATTTTTTTCTGGCAAGTGGTATCGGAGCGCCGAGTCTacgaccaaaaggctccttaaaagcttctacccccccaagccataagactgctgaacaattaatttaatggccaccggactattacattgccccccccccatttgttttgtactctgctgctacttgctgtttattatctatgcatagtcacttcaccc

Function

NR:

description
putative RNA-directed DNA polymerase from transposon X-element

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1705986 True 5648 lncRNA 0.47 2 78624718 78630403

Neighbor

gene id symbol gene type direction distance location
LOC110494628 LOC106565709 coding upstream 48550 78554603 ~ 78576168 (+)
LOC110494627 LOC106565937 coding upstream 71200 78542451 ~ 78553518 (+)
LOC110494624 LOC106565712 coding upstream 198722 78422987 ~ 78425996 (+)
odad1 LOC106565714 coding upstream 211885 78396236 ~ 78412856 (+)
LOC110494621 LOC105017400 coding upstream 228989 78390905 ~ 78395729 (+)
LOC110494631 LOC106582819 coding downstream 23188 78653591 ~ 78669747 (+)
LOC110494632 LOC106565705 coding downstream 43974 78674377 ~ 78681299 (+)
LOC110494635 LOC106565704 coding downstream 88985 78719388 ~ 78728997 (+)
LOC110494637 LOC106565962 coding downstream 117435 78747838 ~ 78914408 (+)
LOC110493265 LOC106565960 coding downstream 292271 78922674 ~ 78932811 (+)
G1492125 NA non-coding upstream 141118 78480780 ~ 78483600 (+)
G1492106 NA non-coding upstream 183731 78440778 ~ 78440987 (+)
G1492099 NA non-coding upstream 190401 78434050 ~ 78434317 (+)
G1492083 NA non-coding upstream 237284 78386899 ~ 78387434 (+)
G1492239 NA non-coding downstream 22706 78653109 ~ 78653334 (+)
G1492193 NA non-coding downstream 42474 78672877 ~ 78673046 (+)
G1492194 NA non-coding downstream 42755 78673158 ~ 78673551 (+)
G1492249 NA non-coding downstream 52653 78683056 ~ 78683313 (+)
G1492250 NA non-coding downstream 53060 78683463 ~ 78683929 (+)
G1492003 NA other upstream 371410 78252629 ~ 78253308 (+)
G1491963 NA other upstream 434428 78189012 ~ 78190290 (+)
G1491899 NA other upstream 604902 78018368 ~ 78019816 (+)
G1491886 NA other upstream 615919 78008290 ~ 78008799 (+)
G1490016 NA other upstream 1940698 76683599 ~ 76684020 (+)
G1492310 NA other downstream 140344 78770747 ~ 78775727 (+)
LOC110493267 LOC106565976 other downstream 699216 79321093 ~ 79336076 (+)
tusc2 tusc2 other downstream 752242 79382417 ~ 79387551 (+)
G1495346 NA other downstream 2663037 81293440 ~ 81293926 (+)
G1495362 NA other downstream 2706614 81337017 ~ 81338163 (+)

Expression


Co-expression Network