G1493195


Basic Information

Item Value
gene id G1493195
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 79339698 ~ 79444677 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1707073
acaaacacctttggcatcgattacaactgtgagtcttcttgggcaaatctctaagagctttgcacacctggattgtggaatatttgcccattattcttttcaaaattcttcaagctctgtcaagatgttggggatcatggctagacagcaattttcaaaACAAATatgttgttgtaatatttgtattctgtatatttgtattcttcttttcactctgacatttaggtcattattgtggagtcactacaatgttgttgatccatcctcagtttt

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1707073 True 273 lncRNA 0.36 2 79339698 79444677

Neighbor

gene id symbol gene type direction distance location
LOC110493267 LOC106565976 coding upstream 3622 79321093 ~ 79336076 (+)
LOC110494644 LOC106565971 coding upstream 24824 79298520 ~ 79314874 (+)
LOC110493266 LOC106582806 coding upstream 51048 79277301 ~ 79288650 (+)
LOC110494642 LOC106565969 coding upstream 66253 79221280 ~ 79273445 (+)
LOC110494641 LOC106565967 coding upstream 123166 79201401 ~ 79216532 (+)
LOC110493268 LOC106582605 coding downstream 103139 79547816 ~ 79844313 (+)
LOC110494656 LOC106566001 coding downstream 403805 79848482 ~ 79871163 (+)
LOC110494660 LOC106565999 coding downstream 429656 79874333 ~ 79882252 (+)
LOC110494661 LOC105025424 coding downstream 455341 79900018 ~ 79925378 (+)
LOC110494662 LOC106565996 coding downstream 481683 79926360 ~ 79930803 (+)
G1493174 NA non-coding upstream 46448 79245955 ~ 79293250 (+)
G1493185 NA non-coding upstream 47731 79290296 ~ 79291967 (+)
G1492371 NA non-coding upstream 403069 78936347 ~ 78936629 (+)
G1493309 NA non-coding downstream 60711 79505388 ~ 79505593 (+)
G1493318 NA non-coding downstream 72105 79516782 ~ 79517163 (+)
G1493488 NA non-coding downstream 72620 79517297 ~ 79517805 (+)
G1493498 NA non-coding downstream 78347 79523024 ~ 79523296 (+)
G1493511 NA non-coding downstream 99769 79544446 ~ 79544948 (+)
G1492310 NA other upstream 563971 78770747 ~ 78775727 (+)
G1492003 NA other upstream 1086390 78252629 ~ 78253308 (+)
G1491963 NA other upstream 1149408 78189012 ~ 78190290 (+)
G1491899 NA other upstream 1319882 78018368 ~ 78019816 (+)
G1495346 NA other downstream 1848763 81293440 ~ 81293926 (+)
G1495362 NA other downstream 1892340 81337017 ~ 81338163 (+)
LOC110494696 LOC106582736 other downstream 1987534 81432188 ~ 81602161 (+)
LOC110494698 LOC106566043 other downstream 2384055 81828571 ~ 81847540 (+)
G1496351 LOC106566032 other downstream 2718529 82163138 ~ 82169750 (+)

Expression


Co-expression Network