G1493415 (rassf1)


Basic Information

Item Value
gene id G1493415
gene name rassf1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 79379122 ~ 79382147 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1707323
CTCAACTCTATTATTCTGTTGTTTTAGGTTTAAAATCTCATAAAGAACATGAAAAgatatacaaacaaacaaacattccaTAAAAATCATCAGCTTCCAGTTCAAAGTGTTTGGAGGATGAGATTCCCCTATCATTTAAATCAACCTGGGGATTGTTCTCTCAATTGACATTCACAGTGCACCCAACACATGGGGCACTCCCACTCAGTTTCATAAAGGGACAGCAAAAAGAGTAACATCCATCACAGTACGGATGtgcaagaggtatgtggcagacATTGGGGTCAAATGGAAACCTGGGGTACCTACCTGGCccataatgtccattgcttgttaTTCTGACTAGCATTTGGGTCTGGAGATACTGAGGCAGACAGCACCTGAATATGTTCAACATTTGTCTTAGCTAGTAGGTTGGCTACCCTCTTATTGCTTGGCATTAAGGGATTTAAACAGCTTTTTGATATGGCTTACCCCACTCAGGTGTCTCAAAATTATCTTTGATCGTTACCCCAAAGCTATAAATGATATAATCTATGGACCCTACTGCCAGCAAGAATAATGAGATAAACGCTACGAACCAGGTAGCTCACCCAGGATAGTGAAATGGCGCCCCCATAATGAGAGGCAGTACTGGACAAAGCCAGTCTCTCATCAGCCACAGTTTCATATACTGTTTCTCAACTCTCATTATCAACAGACTCTCTCCAGCTGTACGGCACTTCTGATAGCTCTCACATTCACACGCGCTTGCCCTCTTGCTCTCATGcgccctctcgctctcattcgtTCTTTCACTCTCCTCCTTTGAGGGAGGTGTCCACTTGTGTTCTCTGGGATCTTTGGATGCAGTGATGACTGGTCATCTTGTGATGGTTGTCAGTCAGAGGTGCAGGTTGTCCCATAGGCGACATGTTTCTCAGCCAGGGGTAGAACCACTAGCGGAGGAACCACCAGGGATGGAAGCAGCAGCTTGGGCCTCCTGCATTCTGGTGCGGGCCAGAGCGTAGCGCTGCAAAATCTGCTTGACATGCTCCTCCTCCTCACGCTGTAACATGCGGACAAAGTTCTTGAGCTCTGGCATAGAGAAGGCATCCCAGTTGACCTCTCCAGTCTCATTCTCTTTCAATACCAAACTGAGGGCTTTCTCATTGGGTCCAGCACACAGACGCAGTTCGAGTGGACGCTCGTCATCAGGCAGCTTACGTAGGAACACTTGGTCATGACGCTCGGTGCGCTCAAACAGGGCAAACTTTCCAGGGTTGTCCACCACAGTGAACTTCTTTAGCAAGGCTTCGATGACCTCACGAGCGCATGTCCGGGAGCTGATGTGTAGGTGTTTAGATGTATCCTTGGGCAGGTAGAAAGAGGTGCAACGTTTTACTCCCCCATTCTTCTTGCCCGCACCATCCTGTGTTGCAGTACCCTTTCTTGGTGGGGGAACTGACACAGGTCGTACCAGCTTGAACTGGACCTTTATGAAGCCAGTGAAGGAGCCATCTTTGTTCAGGTTCATAAAGAGGTTGCTGTTGATTTGAGCATTGTACTCCTTCACCTTCTGCTGGATCTCTGTGCCTGACAGCTCCTGCTGCTTCCCACATTTGACCTGCTCATCCTGACCAGAGAGATAGAAAAGGGAGTCAATATTTCAATAAGCCATTTATTGGCTACACTTTAATTGTCGAAGCAGCTATAAAAGCCCTCTTTCCATTTtgctttctctctcatcttcctAAAGACAAAAAGGGTTATCTTGGGAGTCTTTTGTGTTCTACCACTTTAAGCCAAGTTTAAATGTGTTGCATCTAAAATGATGCCTGTAAGAAATGTGTTATGTGGGCCTAATGGGGGCAAACTAACACCCCACAACATTTCATATTGAAAAAAACTCAAATTGATTAGAGGGACAGTTAAGGAGGCACGACATATCGACCAATTGAACTAAACATTTAGTTAAGAAAATCAGCCCAAATGAAAATTCCCAGAGGTGGACAAGCTGGGTTTTTTCCCGCAGTAGCTGAGAGGAAGGAAGCACTAGACTGGTGTAAGTCAAAATGGTATTGAATGAGAAACAGCATTACTGCTTTTTCAGGACTTGTTGCTGCTGTATAATGAAGAGTTGGTAAATGTGCTAAATAGCAACCTATGCTTCACAGTGCTAACTTCCTGTAAGCTCCACTCCTTCCTTCACAAATGACCACCGGTTGCATCAGATTCCAAACTTCCTGTCAAGTGTCAACGTAGCCATAGCTTACAATAGGGAAGTAGTGGAGCACAATGATGTCAGCGCTGACCAATCCTAGTTCCTGAACTCCTATCTCTGAAGAGGGAGGCACCATGGGGGAACGTGCAGCTGTTTGTAATGTCTGCAACGGCTTTGAGCTGCATTCTTTAATGCTGtgttcatgtaaaaaaaaatatcccccGCCCGCTTGAGATGTCTGGTATGGACACACGGTATCCACCACATGTATGCACTTCCGGTGTCTAGTGGTGCGTTCTTGCTTCCTGTGTGAGGATGTTATTCAGGACATATGATGCACAAAACGTAGGCGCATCAATTAGGG

Function

symbol description
rassf1 Predicted to be involved in Ras protein signal transduction. Predicted to act upstream of or within intracellular signal transduction and regulation of microtubule cytoskeleton organization. Predicted to be located in cytoplasm and microtubule. Predicted to be active in microtubule cytoskeleton and nucleus. Is expressed in several structures, including immature eye; intermediate cell mass of mesoderm; nervous system; pharyngeal arch; and ventral mesoderm. Human ortholog(s) of this gene implicated in breast cancer; reproductive organ cancer (multiple); transitional cell carcinoma; and urinary system cancer (multiple). Orthologous to human RASSF1 (Ras association domain family member 1).

NR:

description
ras association domain-containing protein 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1707323 True 2567 lncRNA 0.46 4 79379122 79382147

Neighbor

gene id symbol gene type direction distance location
hemk1 hemk1 coding downstream 20068 79355894 ~ 79359054 (-)
LOC110494647 glyctk coding downstream 49623 79323224 ~ 79329499 (-)
LOC110494645 LOC106565972 coding downstream 58111 79315200 ~ 79321011 (-)
LOC110494643 LOC106565970 coding downstream 81394 79292446 ~ 79297728 (-)
LOC110493264 NA coding downstream 542728 78741202 ~ 78836394 (-)
LOC110493269 LOC106566002 coding upstream 462263 79844410 ~ 79845741 (-)
LOC110494659 LOC106565998 coding upstream 502346 79884493 ~ 79891542 (-)
cenps apitd1 coding upstream 548353 79930500 ~ 79933811 (-)
LOC110494664 ret7 coding upstream 551719 79933866 ~ 79938222 (-)
h6pd LOC106565995 coding upstream 562113 79944260 ~ 79952863 (-)
G1493367 NA non-coding downstream 64335 79313924 ~ 79314787 (-)
G1493382 NA non-coding downstream 87466 79290283 ~ 79291656 (-)
G1493332 NA non-coding downstream 161975 79215284 ~ 79217147 (-)
G1493152 NA non-coding downstream 178471 79200417 ~ 79200651 (-)
G1493151 NA non-coding downstream 179205 79197747 ~ 79199917 (-)
G1493483 NA non-coding upstream 119277 79501424 ~ 79502027 (-)
G1493490 NA non-coding upstream 135134 79517281 ~ 79517527 (-)
G1493492 NA non-coding upstream 137226 79519373 ~ 79519585 (-)
G1493493 NA non-coding upstream 138126 79520273 ~ 79520539 (-)
G1493500 NA non-coding upstream 143464 79525611 ~ 79525839 (-)
G1493395 LOC106582800 other downstream 29733 79348231 ~ 79349389 (-)
G1492898 NA other downstream 563693 78771571 ~ 78815429 (-)
G1492901 NA other downstream 565167 78803860 ~ 78813955 (-)
G1492910 NA other downstream 597727 78778352 ~ 78781395 (-)
G1492897 NA other downstream 607168 78770740 ~ 78771954 (-)
G1494054 NA other upstream 689492 80071639 ~ 80087637 (-)
G1494870 NA other upstream 1215847 80597994 ~ 80598532 (-)
G1494924 NA other upstream 1310275 80692422 ~ 80694102 (-)
G1495003 NA other upstream 1512941 80895088 ~ 80895437 (-)
G1495113 NA other upstream 1683824 81065971 ~ 81066682 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020232 rassf1 coding NC_007133.7 CM002906.2 10645088 ~ 10658520 (+)