G1493517 (LOC106565995)


Basic Information

Item Value
gene id G1493517
gene name LOC106565995
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 79943091 ~ 79950459 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1707449
aacatgattccatatgtgttatttcatagttttgacgtcttcactattattccacaatgtagaaaatagtacaaataaatacaacacctggaatgagtaggtgtgtccaaacttctgactggtactgtatacatatgCAAACAATTTGAACTTAACTTTTTCAAAAATCGAACTTCACAGGCACATGAAGAACCATCTAAAGATCAATTATATGTGACTAACACATTTTTTTACCAAAATGTCAGATAGAACCTTGTATCTACAAACATCAAATTTAAACCTAATGGAATCCTTTTCACAAGCACCATAAGTATATTAAACATACACCTCTTTGTATAATTAGGGCTGGATTCCATCCGCATCGCAGAAGATCTGCATTATAACTAAATAGAAATTATAAAAAGGCAAAGTTCCCGGGATCactgagactgcattcacggtgaATGCTACATATGTcagctcaatcggaaatgaccttaAATGTATACGTGGAGCTTCCAGACCTTAATTAAGGTAAACGTAGTGAAGCGGTTCGACCAACCTTCATCAACCTGTTTTAAATCTATTTTAAAAGTATTTGGAAGGTCACAACTTTTAAAACCACATACAAGCACCATTTCACTTTCTCACATTAAAAGTGGAAGTATTAGGAAATACTGTGCTGGCTTATAGGGAAAATTGCACCCATTCGGGTCAAAGGCTGTGGACATTTTACATAGATACCAAGTAATACATTTGATCATCATTTTAGTTTTTTGAATTCACGAGCACTGATTAAAACAAAAGCAGCAATGGATCAGAATGTGCTTTGTGGTAATTTAATGTACTGGACAGTacaggttctggcctttctaggtagtttttcctagccaccgtgcttctacacctgcattgcttgctgtttggggttttaggctgggtttctgtacagcactttgagatatcagctgatgtaagaagggctatataaatacatttgatttgattatgcaGTTTGATTTCTTTTGTCATTGAGGCACAAATACAATAATACATGGCTATAGCCTACATTATCTGTTGATCATTCATTTTTACCTAAATTATTGGCCTTTCACAGTTCAAAATCCCCTTTTAACAATCCTATTCTATGCTGGTTCAGTGGAGAACAGGTAGCTTTATGAGAAAATATACTGTTTTTACAACTATATAAAATATAGTATTTTAATAATTATTCATTATCTGAACAACAAACTTCCATATCCACTTTGCTTTCCTGAGATAAAAAAAATCATACTTCTTTAAAATACATgagtgcatcacacacacactacgttaacCCTACATCTTGTATATTGAAAAAGAAAATATATACCACATCTACCTTCAACTTTAAGTAAGGTGCACGGAATCAACAGAACTTTATCATTACTTTACATTCTTGGTCAAAATATAGCAAAAGAGTAAAACTACAGCAAATCATTAATTTAATCCAAATCATTAATTTAATCCACATAATTTCATTGATACAGTATCCCCTATCCTAAAAGAGCATCATAGTCTATGTACCATACTAGCCTGCCACTGGTCGGCCGGATCCCAGTGATGGGCCAATGTTTTGGGTTGTCCTTGACTCGACTGAGCTGAGTGACCAGCTCATGTTTGCTCTTACCCATCACCAGCACACCTACTTTCTGGGCCTGGTTGATAGCCTTGAGGGTGAGGCTCATACGCTGGTGAGGCTTGGCTGGGCTCTCGGTGAAGGCTACTAGACTGTTCCCACTTGCATCTAGTTTGCTGCCTGGGAACAGAGAGGCAGTGTGGCCATCGTAGCCCACTCCCAGCAGGACAAAGTGGAAGCTGGAAGCATTAACCAACTGGGTGATCTCGCTCTCATAGAGCAGCGCTCCACTATCCTCCTCCACACACAGCCGCTGGTTCATCTGCACTGGCATGGGGTGGATGTTGAAGTAGGACATCTTCACGTGTTGGAGCAGGTGGTCGTGCAGGGTGCGGAAGTTGGAGTCCAACTCTGTGAGAGGCACGCATCGCTCGTCCACCATCCACACGTGGGTGTCCCTCCAGGGGAAGGAGTAGTGGTGACGGGCCAGCCTCTGAAACAGAGCTAGGGGACTGGAGCCCCCGGAGAGGGCAAGGTGGAAGCGTCCGCACTCCCTTACCGCGTTCTCCGCTGCAACCTGCAGGTCTGCGGCCAGCCGCACGATGAGCTCCTTGGACCAGGCAGACACCATGTCAGCGCTGCGGTACTTCCCCTGCATCACCTGGAAGCTCTCCCTCCCAGACCCGCCTATGTGGTCCTGGGTGACCATGACCAGTGCCTCATTGGCGAAGGTCACCTTCCGTCCCAACTGTTTGAAATCCAGCATGTTGCCATTGTCCGCTCCCCCGGGATACAGGCGGGGAAAGGTGTCGGCCAGGCTCTGCAGGAGAGGTgtccagaaactccaggaggccaGCAGGTTCTCAGCACTGATAAAGCTGTCCTTCCGGCCTTGGAAGATGTGCAAAATGAGTTCTGCGTAAGCCTCCCTCTCCACTGTTGGCGTCAGCACATAGTAGTCTGAGATGGGCAAACCTAATACACTGACATCTTTGTGTTCTGTTACCTCCTTCCACTCAGTGTCCATCAGGTCTGGCTTGAACAGGTTCTTACTCACGAGAATGGCTGGGTACTGCAGAGTGCCGTGGCCAAAGTAGAACACAATCTGCTTGGGCTTGCAGTGGACGCTGCTGTAGCTCTGAATACAGAAGATGTCATTCTTGAACAGAATGCGAGCGTAGCCTACGCGCTCATCCAGCATCTTCCCTGAGGTCAGAATGACTGGCATGCCCTCGTACTGGGCTAGGTCAATGTGCACCATTATACCAGGCACCCAGTTGAGTGGACAGGAGTTGGGCGCTACTGAAATCATGGCCAAATGGCTTCTCCAGCACCACCCTCAACCACGCCCCGTCAGTCGGCCTGCAGCTGTTGTTGATCTTTTCTGCAATGTCCGCATAAGCGAAGGCTGGCACTGACAGGTAGAACAGCCTGCCGGCCTCCACTATGCCCTCCTGCCTCAGCTGCTCTGTCAGGTGTGTGCCCAGGGCCTGGTAGTCCTCTGAAGTATTCAACTGCCGATACTCAGCCAGCCTCAGGAACTGCTCCTTCACCAGGGCACAGCGCTCCACAGACAACTCCCGAGGACAGACCACTCCCTTCAGCACATCAAACAGGATCGGCGTGGCCTTATCGTTGGGCGACAGGCCTCCGCCATAAAAGGAGAAGCTGTAGCCGCTACTGACCTGGTTAGCGTACAGATGGAAGAAGCCCTGCCACAGGTACTTCTTAGCCAAGTCACCTGTACCTCCCACTATGACCACTGACACATGACCTAGGCTCTGTGCTCCCTTGGCTTCCTTGGTATAGCCTCTCTGGACACACACAGTGGCCAGAAGCAGCAGTGCTGCCCACACAACCTTCCACATTCTCTGGTCCAACACAGATCAGCAcc

Function

NR:

description
GDH/6PGL endoplasmic bifunctional protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1707449 True 3491 lncRNA 0.46 2 79943091 79950459

Neighbor

gene id symbol gene type direction distance location
LOC110494662 LOC106565996 coding upstream 12288 79926360 ~ 79930803 (+)
LOC110494661 LOC105025424 coding upstream 17713 79900018 ~ 79925378 (+)
LOC110494660 LOC106565999 coding upstream 60839 79874333 ~ 79882252 (+)
LOC110494656 LOC106566001 coding upstream 71928 79848482 ~ 79871163 (+)
LOC110493268 LOC106582605 coding upstream 98778 79547816 ~ 79844313 (+)
LOC110493270 LOC106565994 coding downstream 9402 79959861 ~ 79980095 (+)
LOC110495196 LOC106565991 coding downstream 64650 80015109 ~ 80017775 (+)
LOC110494679 LOC106565990 coding downstream 74631 80025090 ~ 80041751 (+)
LOC110494682 edem1 coding downstream 88267 80038726 ~ 80047063 (+)
LOC118940652 NA coding downstream 336486 80286945 ~ 80286998 (+)
G1493698 NA non-coding upstream 95366 79847235 ~ 79847725 (+)
G1493681 NA non-coding upstream 141820 79799970 ~ 79801271 (+)
G1493511 NA non-coding upstream 398143 79544446 ~ 79544948 (+)
G1493498 NA non-coding upstream 419795 79523024 ~ 79523296 (+)
G1493488 NA non-coding upstream 425286 79517297 ~ 79517805 (+)
G1493733 NA non-coding downstream 22553 79973012 ~ 79973225 (+)
G1493734 NA non-coding downstream 23673 79974132 ~ 79974513 (+)
G1493740 LOC106565993 non-coding downstream 46180 79996639 ~ 79997179 (+)
G1493744 NA non-coding downstream 49803 80000262 ~ 80000478 (+)
tusc2 tusc2 other upstream 557654 79382417 ~ 79387551 (+)
LOC110493267 LOC106565976 other upstream 607019 79321093 ~ 79336076 (+)
G1492310 NA other upstream 1167364 78770747 ~ 78775727 (+)
G1492003 NA other upstream 1689783 78252629 ~ 78253308 (+)
G1491963 NA other upstream 1752801 78189012 ~ 78190290 (+)
G1495346 NA other downstream 1342981 81293440 ~ 81293926 (+)
G1495362 NA other downstream 1386558 81337017 ~ 81338163 (+)
LOC110494696 LOC106582736 other downstream 1481752 81432188 ~ 81602161 (+)
LOC110494698 LOC106566043 other downstream 1878273 81828571 ~ 81847540 (+)
G1496351 LOC106566032 other downstream 2212747 82163138 ~ 82169750 (+)

Expression


Co-expression Network