G1494067 (LOC106565988)


Basic Information

Item Value
gene id G1494067
gene name LOC106565988
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 80101968 ~ 80102396 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1708049
CTCTGCACTGGCGGATTGGGTTGCCATACTTTACATCCTGTCGACGGCTGCGCCTAGAGGGGTCAGATCTCTTCTGCGAGGCGGAGTAGCGGGTACAGGACTTTCCGTCCCAGGCGCAGTAGGGGTCCCGGGCCAGGCAGCAGTCAGCACACACCTCACCGTACACGTCACAGCGATGGAGGGCCAGGTGGGTCACACCCAACACTGAGCCCACATACAGCTGTTGC

Function

NR:

description
semaphorin-3F-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1708049 True 227 lncRNA 0.62 2 80101968 80102396

Neighbor

gene id symbol gene type direction distance location
LOC110494682 edem1 coding upstream 54905 80038726 ~ 80047063 (+)
LOC110494679 LOC106565990 coding upstream 60217 80025090 ~ 80041751 (+)
LOC110495196 LOC106565991 coding upstream 84193 80015109 ~ 80017775 (+)
LOC110493270 LOC106565994 coding upstream 121873 79959861 ~ 79980095 (+)
LOC110494662 LOC106565996 coding upstream 171165 79926360 ~ 79930803 (+)
LOC118940652 NA coding downstream 184549 80286945 ~ 80286998 (+)
trnak-cuu-20 NA coding downstream 321482 80423878 ~ 80423950 (+)
trnak-cuu-21 NA coding downstream 322464 80424860 ~ 80424932 (+)
trnak-cuu-22 NA coding downstream 323445 80425841 ~ 80425913 (+)
trnak-cuu-23 NA coding downstream 325220 80427616 ~ 80427688 (+)
G1494065 LOC106565988 non-coding upstream 620 80098641 ~ 80101348 (+)
G1494066 NA non-coding upstream 4200 80097229 ~ 80097768 (+)
G1494064 NA non-coding upstream 5527 80096151 ~ 80096441 (+)
G1494061 NA non-coding upstream 6833 80094889 ~ 80095135 (+)
G1493767 NA non-coding upstream 28755 80065105 ~ 80073213 (+)
G1494068 LOC106565988 non-coding downstream 1295 80103691 ~ 80103913 (+)
G1494076 NA non-coding downstream 13046 80115442 ~ 80115657 (+)
G1494129 NA non-coding downstream 104429 80206825 ~ 80207098 (+)
G1494216 NA non-coding downstream 112219 80214615 ~ 80214947 (+)
G1494242 NA non-coding downstream 142182 80244578 ~ 80245063 (+)
tusc2 tusc2 other upstream 716531 79382417 ~ 79387551 (+)
LOC110493267 LOC106565976 other upstream 765896 79321093 ~ 79336076 (+)
G1492310 NA other upstream 1326241 78770747 ~ 78775727 (+)
G1492003 NA other upstream 1848660 78252629 ~ 78253308 (+)
G1491963 NA other upstream 1911678 78189012 ~ 78190290 (+)
G1495346 NA other downstream 1191044 81293440 ~ 81293926 (+)
G1495362 NA other downstream 1234621 81337017 ~ 81338163 (+)
LOC110494696 LOC106582736 other downstream 1329815 81432188 ~ 81602161 (+)
LOC110494698 LOC106566043 other downstream 1726336 81828571 ~ 81847540 (+)
G1496351 LOC106566032 other downstream 2060810 82163138 ~ 82169750 (+)

Expression


Co-expression Network