G1494242


Basic Information

Item Value
gene id G1494242
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 80244578 ~ 80245063 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1708229
ggctttgacttagaatacgtggacaactacaaatacttaggtgtctggttagactgtaaactctccttccagacccatatcaaacatctccaatccaaagttaaatctagaattggcttcctatttcgcaacaaagcatccttcactcatgctgccaaacatacccttgtaaaactgaccatcctaccaatcctcgactttggcgatgtaatttacaaaatagcctccaataccctactcaacaaactggatgcagtctatcacagtgcaatccgttttgtcaccaaagccccatatactacccaccattgcgacctgtacgctctcgttggctggccctcgcttcatactcgtcgccaaacccactggctccatgtcatctacaagaccctgctaggtaaagtccccccttatctcagctcgctggtcaccatagcatctcccacctgtagcacacgctccagcaggtatatctctcttgtcacc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1708229 True 486 lncRNA 0.47 1 80244578 80245063

Neighbor

gene id symbol gene type direction distance location
LOC110494682 edem1 coding upstream 197515 80038726 ~ 80047063 (+)
LOC110494679 LOC106565990 coding upstream 202827 80025090 ~ 80041751 (+)
LOC110495196 LOC106565991 coding upstream 226803 80015109 ~ 80017775 (+)
LOC110493270 LOC106565994 coding upstream 264483 79959861 ~ 79980095 (+)
LOC110494662 LOC106565996 coding upstream 313775 79926360 ~ 79930803 (+)
LOC118940652 NA coding downstream 41882 80286945 ~ 80286998 (+)
trnak-cuu-20 NA coding downstream 178815 80423878 ~ 80423950 (+)
trnak-cuu-21 NA coding downstream 179797 80424860 ~ 80424932 (+)
trnak-cuu-22 NA coding downstream 180778 80425841 ~ 80425913 (+)
trnak-cuu-23 NA coding downstream 182553 80427616 ~ 80427688 (+)
G1494216 NA non-coding upstream 29631 80214615 ~ 80214947 (+)
G1494129 NA non-coding upstream 37480 80206825 ~ 80207098 (+)
G1494076 NA non-coding upstream 128921 80115442 ~ 80115657 (+)
G1494068 LOC106565988 non-coding upstream 140665 80103691 ~ 80103913 (+)
G1494067 LOC106565988 non-coding upstream 142182 80101968 ~ 80102396 (+)
G1494253 NA non-coding downstream 8681 80253744 ~ 80254178 (+)
G1494313 NA non-coding downstream 58611 80303674 ~ 80303896 (+)
G1494316 NA non-coding downstream 60631 80305694 ~ 80306069 (+)
G1494322 NA non-coding downstream 67469 80312532 ~ 80313116 (+)
G1494334 NA non-coding downstream 76441 80321504 ~ 80321766 (+)
tusc2 tusc2 other upstream 859141 79382417 ~ 79387551 (+)
LOC110493267 LOC106565976 other upstream 908506 79321093 ~ 79336076 (+)
G1492310 NA other upstream 1468851 78770747 ~ 78775727 (+)
G1492003 NA other upstream 1991270 78252629 ~ 78253308 (+)
G1491963 NA other upstream 2054288 78189012 ~ 78190290 (+)
G1495346 NA other downstream 1048377 81293440 ~ 81293926 (+)
G1495362 NA other downstream 1091954 81337017 ~ 81338163 (+)
LOC110494696 LOC106582736 other downstream 1187148 81432188 ~ 81602161 (+)
LOC110494698 LOC106566043 other downstream 1583669 81828571 ~ 81847540 (+)
G1496351 LOC106566032 other downstream 1918143 82163138 ~ 82169750 (+)

Expression


Co-expression Network