G1494348 (LOC106565987)


Basic Information

Item Value
gene id G1494348
gene name LOC106565987
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 80365279 ~ 80365885 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1708339
TCCTCTCGAAGATGGTGAAGGCTGCGTCAGCTGCCTTGGAGGACTTCCTGTCGTCCAGCCCGCCACCGGAGGCCTTGAGTACAGGGGACGGAACACGGACACTGTCCTTCTGACGGTTCTGGATCTTAGCCCAGCGCTCCATATCCTTCATCTTGAAAGCGGCTAGGCTCCTgggtttctcctctttctctcctggtTTGTCTTTGTTGTCTTTCTTGTCTATGCGAGGTGtagtgtcctcctcctctctcctctcgggggaagggttggggttaggggcaGGAGTGGGGTTCAGGAGCTGGGGAGGGTCGAAGTGAGGGGTTGGCTCTGGTTTCTTCATGTCCAGCGGAGCGTCTGCTGCTGGATTAGCCAGAATGGCCTGTACGTCTGGTGCCAAGGCAACACCAGACTGGGCAATGGGGAGCTGGGTGTCTGTAGAGTGTCCTCCGGGAACGGGGATGTACGTCTTGGACACACTGTCCCAGTACAGGTACTCCTGGGTCTGGGCATTGTAGAAA

Function

NR:

description
RNA-binding protein 5-like isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1708339 True 518 lncRNA 0.57 2 80365279 80365885

Neighbor

gene id symbol gene type direction distance location
LOC118940652 NA coding upstream 78281 80286945 ~ 80286998 (+)
LOC110494682 edem1 coding upstream 318216 80038726 ~ 80047063 (+)
LOC110494679 LOC106565990 coding upstream 323528 80025090 ~ 80041751 (+)
LOC110495196 LOC106565991 coding upstream 347504 80015109 ~ 80017775 (+)
LOC110493270 LOC106565994 coding upstream 385184 79959861 ~ 79980095 (+)
trnak-cuu-20 NA coding downstream 57993 80423878 ~ 80423950 (+)
trnak-cuu-21 NA coding downstream 58975 80424860 ~ 80424932 (+)
trnak-cuu-22 NA coding downstream 59956 80425841 ~ 80425913 (+)
trnak-cuu-23 NA coding downstream 61731 80427616 ~ 80427688 (+)
trnak-cuu-24 NA coding downstream 63219 80429104 ~ 80429176 (+)
G1494347 NA non-coding upstream 916 80362152 ~ 80364363 (+)
G1494335 NA non-coding upstream 42403 80322468 ~ 80322876 (+)
G1494334 NA non-coding upstream 43513 80321504 ~ 80321766 (+)
G1494322 NA non-coding upstream 52163 80312532 ~ 80313116 (+)
G1494316 NA non-coding upstream 59210 80305694 ~ 80306069 (+)
G1494373 NA non-coding downstream 2545 80368430 ~ 80372190 (+)
G1494375 NA non-coding downstream 9508 80375393 ~ 80375658 (+)
G1494398 LOC106565986 non-coding downstream 12264 80378149 ~ 80379663 (+)
trnak-cuu-68 NA non-coding downstream 122820 80488705 ~ 80490659 (+)
G1494489 NA non-coding downstream 128962 80494847 ~ 80495322 (+)
tusc2 tusc2 other upstream 979842 79382417 ~ 79387551 (+)
LOC110493267 LOC106565976 other upstream 1029207 79321093 ~ 79336076 (+)
G1492310 NA other upstream 1589552 78770747 ~ 78775727 (+)
G1492003 NA other upstream 2111971 78252629 ~ 78253308 (+)
G1491963 NA other upstream 2174989 78189012 ~ 78190290 (+)
G1495346 NA other downstream 927555 81293440 ~ 81293926 (+)
G1495362 NA other downstream 971132 81337017 ~ 81338163 (+)
LOC110494696 LOC106582736 other downstream 1066326 81432188 ~ 81602161 (+)
LOC110494698 LOC106566043 other downstream 1462847 81828571 ~ 81847540 (+)
G1496351 LOC106566032 other downstream 1797321 82163138 ~ 82169750 (+)

Expression


Co-expression Network