G1494473


Basic Information

Item Value
gene id G1494473
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 80423310 ~ 80480411 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1708474
aTTGAGCTAGCTAGgTACCTCAACAGTAATTttgacttggtccgaatatcatacagctccgtttgtgcaaaatatggtgattagtgaaggtgttgttgatggatcctgtggtgcaatctgttagcgtgttgtacttatacagcagtatacagcaattagatgacaaggttgtgcgttcaagatccaccaggagcaagtattcctcttgaaccctctccctgtctatttcttgtccagaaaaggagcattttaattcaatacacttaggaggacgtttcataattaattggtatgttattgagataacaggtcagagtgcagccACTACTCCTATTCAAACCCATAGTCTCCTGTTTCACTAGCTAAGCCTGACACATCAGCAgtgcagggtggcaagcctgccCTATAGAGCATGCGGATAGCCGTTTgcaaagtgagttggtgcttcggtgGAGAAAACCATCACCTACCATGGAGCTCGAACACACTACCCTGAGACTACCCTGAGATTAATAgcctcatgctctaccgactgagatCGCCAGGAACCTCAATCAACACCTTGACTTGACCGAGAATTGTAC
>TU1708480
ccctctgactgtctatttcttgtccagaaaatgatcatttattcaatctatttcataagtaattggtatgtcatagagataacaggtcagagtgcaggcacagctacgattcaaatgcatattcctctgcattaccagctttgcctgacacatcagcaatacagggtggcaagcctgctcgaaaatccaagcgttTCGCTGTTCGCAAAGTGAGTTtgtacttcggcagagaaaataatcacccaacgtggggctcgaacccacgaccctgagattaagagtctcatgctctaccgactgagctagctaggTACCTCAACAGTAATTttgacttggtccgaatatcatacagctccgtttgtgcaaaatatggtgattagtgaaggtgttgttgatggatcctgtggtgcaatctgttagcgtgttgtacttatacagcagtatacagcaattagatgacaaggttgtgcgttcaagatccaccaggagcaagtattcctcttgaaccctctcactgtctatttcttgtccagaaaaggagcattttaatgcaatacacttaggaggatgtttcataattaattggtatgttattgagataacaggtcagagtgcaggcacagctaggattcaaatccatagtcttctctatcaccagctATGCAGGGTGGCAAGTCTGCTCGAAAGTCCAGGTGAATGGCTGTTTgcaaagtgagttggtgcttcggctcagACAAGAATCAGCCCATTTGTGGTATCGACCCTACGATTCTGAGATTAAGAGGCTCATGCTCAAACGCctgagcttgccaggcaggtc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1708474 False 584 lncRNA 0.45 3 80423310 80430098
TU1708480 True 820 lncRNA 0.44 3 80424352 80480411

Neighbor

gene id symbol gene type direction distance location
LOC110494675 LOC106565986 coding downstream 12406 80378137 ~ 80410904 (-)
LOC110494668 LOC106565987 coding downstream 48015 80362125 ~ 80375295 (-)
LOC110494673 LOC106565988 coding downstream 216203 80098447 ~ 80207107 (-)
LOC118940496 NA coding downstream 283035 80134212 ~ 80140275 (-)
LOC110494676 LOC106582761 coding downstream 333434 80047826 ~ 80089876 (-)
trnai-uau-32 NA coding upstream 16 80480427 ~ 80480520 (-)
trnai-uau-33 NA coding upstream 2480 80482891 ~ 80482984 (-)
trnai-uau-34 NA coding upstream 3976 80484387 ~ 80484480 (-)
trnai-uau-35 NA coding upstream 9847 80490258 ~ 80490351 (-)
trnai-uau-36 NA coding upstream 12312 80492723 ~ 80492816 (-)
G1494394 NA non-coding downstream 70080 80352982 ~ 80353230 (-)
G1494392 NA non-coding downstream 74508 80348280 ~ 80348802 (-)
G1494383 NA non-coding downstream 85147 80337961 ~ 80338163 (-)
G1494346 NA non-coding downstream 91151 80331906 ~ 80332159 (-)
G1494345 NA non-coding downstream 92253 80330813 ~ 80331057 (-)
G1494487 NA non-coding upstream 4520 80484931 ~ 80489293 (-)
G1494499 NA non-coding upstream 21128 80501539 ~ 80502119 (-)
G1494877 NA non-coding upstream 135995 80616406 ~ 80616897 (-)
G1494932 NA non-coding upstream 227669 80708080 ~ 80708400 (-)
G1494987 NA non-coding upstream 373135 80853546 ~ 80853878 (-)
G1494054 NA other downstream 335673 80071639 ~ 80087637 (-)
G1493395 LOC106582800 other downstream 1073921 79348231 ~ 79349389 (-)
G1492898 NA other downstream 1607881 78771571 ~ 78815429 (-)
G1492901 NA other downstream 1609355 78803860 ~ 78813955 (-)
G1492910 NA other downstream 1641915 78778352 ~ 78781395 (-)
G1494870 NA other upstream 117583 80597994 ~ 80598532 (-)
G1494924 NA other upstream 212011 80692422 ~ 80694102 (-)
G1495003 NA other upstream 414677 80895088 ~ 80895437 (-)
G1495113 NA other upstream 585560 81065971 ~ 81066682 (-)
LOC110494689 LOC106566051 other upstream 613108 81090497 ~ 81103942 (-)

Expression


Co-expression Network