G1495349 (LOC106562530)


Basic Information

Item Value
gene id G1495349
gene name LOC106562530
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 81295847 ~ 81296593 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1709449
ATCCGGATAGAGGCGATGGAACTCCCTTAGTATAGTGGGATCCAATATATCCCCCaccgggacccagcacctctcctccggcccgtacccctcccagtccacgaggtactgcaggcccctcacctgGCGTCTGGAGTCCAGAATGGACCGtatcgtgtacgccggggacccctcgatgtccagagggggcggagggacctccggaACCTCACTTTCCTGcatgggaccagctaccaccggcctgaggagagacacatgaaacgaggggtaaATACGATAATACGAAGGGAGTAacaatcgataacacacctcgtttattctcctcaggactttaaatggccctacacactgcggacccagcttccggcagggcaggcggaggggcaggtttcgggtcgagatccagaccctgtcccccggtgcaaacacgggggcctcactgcagtGACGGTCAGCGCTCTTCTTCTGCCGTCAACTCGCCTGACGCAATGACTCCTGGTCGACTCTCCAGGTCTCCTTAGAGcgctgcacccactcctccaccgcaggagcctcggtctggctctgatgccatggtgccagaacCGACTGGTACCCCAACACGCACTCAAACGGTGACATGTTGGTAGAGGAGTGGcttagtgagttctgggccatttctgcccaggggatgtatctcgcccactcccctggccggtcctggcaatacgaccgcagaaacctacccacctcctggttcactctctc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1709449 True 747 lncRNA 0.60 1 81295847 81296593

Neighbor

gene id symbol gene type direction distance location
LOC110494688 LOC106566052 coding upstream 253228 81018030 ~ 81042619 (+)
LOC110494687 LOC106566053 coding upstream 280857 81008457 ~ 81014990 (+)
lmod1b LOC106566054 coding upstream 291112 80997864 ~ 81004735 (+)
LOC110494685 LOC106566055 coding upstream 302320 80983250 ~ 80993527 (+)
LOC110493271 LOC106566056 coding upstream 317408 80947799 ~ 80978439 (+)
LOC110494692 LOC106566047 coding downstream 26974 81323567 ~ 81335099 (+)
LOC110494694 LOC106566046 coding downstream 77940 81374533 ~ 81380787 (+)
LOC118940108 NA coding downstream 96109 81392702 ~ 81393600 (+)
LOC110494696 LOC106582736 coding downstream 135595 81432188 ~ 81602161 (+)
LOC110494698 LOC106566043 coding downstream 531978 81828571 ~ 81847540 (+)
G1495343 NA non-coding upstream 6929 81288699 ~ 81288918 (+)
G1495181 NA non-coding upstream 94750 81200888 ~ 81201097 (+)
G1495174 NA non-coding upstream 105734 81189885 ~ 81190113 (+)
G1495169 NA non-coding upstream 118258 81177365 ~ 81177589 (+)
G1495164 NA non-coding upstream 124903 81170520 ~ 81170944 (+)
G1495350 LOC100380853 non-coding downstream 29 81296622 ~ 81297064 (+)
G1495355 NA non-coding downstream 10971 81307564 ~ 81307832 (+)
G1495356 NA non-coding downstream 11285 81307878 ~ 81308166 (+)
G1495338 NA non-coding downstream 18939 81315532 ~ 81316750 (+)
G1495359 NA non-coding downstream 23220 81319813 ~ 81320091 (+)
G1495346 NA other upstream 1921 81293440 ~ 81293926 (+)
tusc2 tusc2 other upstream 1910410 79382417 ~ 79387551 (+)
LOC110493267 LOC106565976 other upstream 1959775 79321093 ~ 79336076 (+)
G1492310 NA other upstream 2520120 78770747 ~ 78775727 (+)
G1492003 NA other upstream 3042539 78252629 ~ 78253308 (+)
G1495362 NA other downstream 40424 81337017 ~ 81338163 (+)
G1496351 LOC106566032 other downstream 866613 82163138 ~ 82169750 (+)
G1497918 NA other downstream 2317672 83614265 ~ 83634495 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G74169 NA unknown NC_035904.1 CM008307.1 16286676 ~ 16288329 (+)