G1495350 (LOC100380853)


Basic Information

Item Value
gene id G1495350
gene name LOC100380853
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 81296622 ~ 81297064 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1709450
cccgaggtcaggctgaccgagacccccagccgCTCCATAAACACCTTCCATACTCTGGACAtaaactggggaccccgatcagaaacgatatCCTCGGGCTCCCCGTAATGCCGAAAGACATGGGTGAATAGTGCctccgcagtctgcagggccgtagggagaccgggcaacgggataagacggcaggacttagagaaccgatccacaacgaccaggatcgtcgTGTTCCCCTGAGACAGGGGAAGCCCGTAAGAAATTCCACCGATAGATGGGACCACGGccattgtggaacggggaggggttgtaatttccctcgtGGCAaatgcctaggagccttactctgagcgcataccgaacaggaggagacatagaaTCGCACGTCTCTcaccaaggtaggccaccagtacttccctcTAAGACTTCGCTCCGTCCTCGAAATACCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1709450 True 443 lncRNA 0.57 1 81296622 81297064

Neighbor

gene id symbol gene type direction distance location
LOC110494688 LOC106566052 coding upstream 254003 81018030 ~ 81042619 (+)
LOC110494687 LOC106566053 coding upstream 281632 81008457 ~ 81014990 (+)
lmod1b LOC106566054 coding upstream 291887 80997864 ~ 81004735 (+)
LOC110494685 LOC106566055 coding upstream 303095 80983250 ~ 80993527 (+)
LOC110493271 LOC106566056 coding upstream 318183 80947799 ~ 80978439 (+)
LOC110494692 LOC106566047 coding downstream 26503 81323567 ~ 81335099 (+)
LOC110494694 LOC106566046 coding downstream 77469 81374533 ~ 81380787 (+)
LOC118940108 NA coding downstream 95638 81392702 ~ 81393600 (+)
LOC110494696 LOC106582736 coding downstream 135124 81432188 ~ 81602161 (+)
LOC110494698 LOC106566043 coding downstream 531507 81828571 ~ 81847540 (+)
G1495349 LOC106562530 non-coding upstream 29 81295847 ~ 81296593 (+)
G1495343 NA non-coding upstream 7704 81288699 ~ 81288918 (+)
G1495181 NA non-coding upstream 95525 81200888 ~ 81201097 (+)
G1495174 NA non-coding upstream 106509 81189885 ~ 81190113 (+)
G1495169 NA non-coding upstream 119033 81177365 ~ 81177589 (+)
G1495355 NA non-coding downstream 10500 81307564 ~ 81307832 (+)
G1495356 NA non-coding downstream 10814 81307878 ~ 81308166 (+)
G1495338 NA non-coding downstream 18468 81315532 ~ 81316750 (+)
G1495359 NA non-coding downstream 22749 81319813 ~ 81320091 (+)
G1495363 NA non-coding downstream 38131 81335195 ~ 81336268 (+)
G1495346 NA other upstream 2696 81293440 ~ 81293926 (+)
tusc2 tusc2 other upstream 1911185 79382417 ~ 79387551 (+)
LOC110493267 LOC106565976 other upstream 1960550 79321093 ~ 79336076 (+)
G1492310 NA other upstream 2520895 78770747 ~ 78775727 (+)
G1492003 NA other upstream 3043314 78252629 ~ 78253308 (+)
G1495362 NA other downstream 39953 81337017 ~ 81338163 (+)
G1496351 LOC106566032 other downstream 866142 82163138 ~ 82169750 (+)
G1497918 NA other downstream 2317201 83614265 ~ 83634495 (+)

Expression


Co-expression Network