G1495372


Basic Information

Item Value
gene id G1495372
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 81342127 ~ 81344561 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1709479
gggcatcCCTGGTCTAGGGTAAACCATAGGGCCTAGGCCACATCCCCAAAGCATACAAATCAGTCttgaatctgttttttaaatttatttgttCACAAAGTACAACAAAAATTCAAACACAAACGCATTAGATTTACATTCAAGAACCAATTTGTTGTGAGCTATCTAACTCATATAACTCGTAAGTTCAAATAGGACTTCTGTCTTCAGCATTTCATCTTGTTATTCTGGACTATCCCAAATATAATCCAACAGTATGGAATTAAAATAGTGTACAGTAATTACACCCAGATAGTGCACAGTATAGCCAGGTAGGAGTGTTGATGGCTCTGACACATAAATTGAATGAAAGTAGCAAACCAATTATAAGTGCTGTTCAAGCACAGTGCACAAATATCACATTATGCAAACAGGGCGGGATTACCGAACGGGCacgtgacaaaatgtgtagaattgcattatAAAACTGCACATGTTGAAATGCAGAAAGTTAGCTGTATTCTCctcccaaaatatatattttttggggccCCGAGGCCCAAAATGCATTAGTCCGGCCCTGGATGCAATGCACTACCAGCAACCAATAAACAGTCAGCTCTTGTTGCCATCTTTACTCATAATTGGGTTTATGTATGATAAAATACATAAAATAGTTGAAGGAATTAGCAAATGAATGAGCAGGTTCTGAAACCACTGTGTGCCGAAACATTGGTTCATCAATACAATACATATCTGGGAGTATTGTGAGAAATAGCTTTCAATTTCATCAAGCCGCTTAAATCCAATCTGTCTGTTGAGCCAGTGAGGTACAAAAGGCCCTTTATGCTATTCATGATCAAATATCGAGTCCTGccacaatatatactgtaggctattgACTAGTCTTAGATCACGGTTCAGAGTAtttgctgttgaggctactgtgaAACCACACAGTGATTCAAACAAAGCGGCCTGTTGTGATTGGCTGATTACACCTGAGCAATACAAGTTGACTACAACTCATAGAGGACCTGGAAGCGCAGCGTTCAGTTATGTGATTGGCTGTGAGTGATGCCATGACTACCCATGCCGTAACCGGTCATAATCCCACTTACATGTTTATGCTACGTTTGAGGGGGCGCAGGTTGCCAGTGATATAGCGCGGAGGTGGCATGCTGTGGCAACAACTGGCAAAACACTGCAGGCATTGTATACACTACAGACAGAGTGAAGCAGTAAATCAAGGATCTGTTTTTAGAAGGTCTCAAAAACTTAAACTCTGCCCCATAGGATGACTATGTACCATAAAGGCTATGCTTTGTTTCAACCCATCTGAACTGGCATGACACACATACCTTATtccagagccatgtatttagatttttttttaaatgatattgtTCTAATTCTAGACATTGTTACATAGCATTATAGACATATTTCCCATGTAATGTAAATGGccgctaacatggctgccatgtaTTGTTGTCtcatgtaaatgcatcataaAGCAGAAACCACAATGTcccaactctctaaatacatggctctACCTTATTCTAGTGAACATTAATGTGTCTGTTCAGACATGAAATCGTGGAAAACAGGCCTTCTAGTATGCTTTTCTATAGATATCAATCTGTCTCCTGCTGCACCAGCTAACAGACAATACATTTGGAAAGATATTATGAATAGCAGCACTAGAACCAGGGTGGCAACATTtcaggaactttcaataaattccatgTTTTTCCCAGAATCCCAGTTGGAGGATTCCCAGAATCAGTAGGGGAATCAGTAGGGGAATAAGGAGGGGAATCAGTAGAGGAATTCTAAAACCAGGATCTCAGGAAAATCAGGGAATTTATCAAAAGTTGCAACCCTAACTAGAACAGAGGGATACTACTTCCATGAACTGTAGTGTTAGCCTTCACAATAATGAGACATTAACTAATAATACATTTATTGTTTCAGCACTTAATTCAGAAGTGTATGAGAGATTGACGTAATTTAGAGGTGGGACTTGGAAGTCAAATGTAGGTTGAAATACTTTCTATTTACCGTTCTGTGTAACTCAACATAACTTCAAGTTCCTGTAATAATAATAAACGAATAACTGCGTGAATATCTGGTAAATGTTTACTTTAAAAACCTGGCTTCTTAGCAGTTGCATCTCTGAGTTGCGTCTGGATGTTGATACAAGACTTGGCCAACATAATCAGTAccaaaacaacaagtgtgtgtgcACGCTGAAGACAGGAGAGCAAACATTTCTGTCTGTAGTTTTGGAGTGTTGGTGTCTGaggggtgtgtatgtgtacgtgtgtgagaTGGGGTCAGATTCGAGTCAGCTGATGCCAGAAACTGGATGGCATGAAGCTCTCCATCTTGTCTGCGAAGAAACCCAGGGGTGTGAAGAGGGTGCT

Function

NR:

description
suppressor of tumorigenicity 7 protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1709479 True 2411 lncRNA 0.40 2 81342127 81344561

Neighbor

gene id symbol gene type direction distance location
LOC110494692 LOC106566047 coding upstream 7028 81323567 ~ 81335099 (+)
LOC110494691 LOC106566048 coding upstream 28867 81284086 ~ 81313260 (+)
LOC110494688 LOC106566052 coding upstream 299508 81018030 ~ 81042619 (+)
LOC110494687 LOC106566053 coding upstream 327137 81008457 ~ 81014990 (+)
lmod1b LOC106566054 coding upstream 337392 80997864 ~ 81004735 (+)
LOC110494694 LOC106566046 coding downstream 29972 81374533 ~ 81380787 (+)
LOC118940108 NA coding downstream 48141 81392702 ~ 81393600 (+)
LOC110494696 LOC106582736 coding downstream 87627 81432188 ~ 81602161 (+)
LOC110494698 LOC106566043 coding downstream 484010 81828571 ~ 81847540 (+)
LOC118940109 NA coding downstream 516990 81861551 ~ 81862479 (+)
G1495363 NA non-coding upstream 5859 81335195 ~ 81336268 (+)
G1495359 NA non-coding upstream 22036 81319813 ~ 81320091 (+)
G1495338 NA non-coding upstream 25377 81315532 ~ 81316750 (+)
G1495356 NA non-coding upstream 33961 81307878 ~ 81308166 (+)
G1495355 NA non-coding upstream 34295 81307564 ~ 81307832 (+)
G1495408 LOC106586415 non-coding downstream 79917 81424478 ~ 81424709 (+)
G1495409 NA non-coding downstream 80484 81425045 ~ 81425329 (+)
G1495456 NA non-coding downstream 149391 81493952 ~ 81494430 (+)
G1495417 NA non-coding downstream 258011 81602572 ~ 81603171 (+)
G1495707 NA non-coding downstream 260457 81605018 ~ 81605225 (+)
G1495362 NA other upstream 3964 81337017 ~ 81338163 (+)
G1495346 NA other upstream 48201 81293440 ~ 81293926 (+)
tusc2 tusc2 other upstream 1956690 79382417 ~ 79387551 (+)
LOC110493267 LOC106565976 other upstream 2006055 79321093 ~ 79336076 (+)
G1492310 NA other upstream 2566400 78770747 ~ 78775727 (+)
G1496351 LOC106566032 other downstream 818645 82163138 ~ 82169750 (+)
G1497918 NA other downstream 2269704 83614265 ~ 83634495 (+)
LOC110494749 LOC106566083 other downstream 2535371 83879805 ~ 83890067 (+)

Expression


Co-expression Network