G1496030 (LOC106566041)


Basic Information

Item Value
gene id G1496030
gene name LOC106566041
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 81884283 ~ 81887740 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1710206
ggggttatggtatgggcagtcataagctacggacaacgaacacaattgcattttatcgatgggaGGCCCAttctttttaaggtatctgtgaccaacagatgcatatcagtATTCTCAGTCATGTCAAATCaacagattagggcctaatgaatttatttcaattgactgttttccttatgaactgtaactcagtaaaatctttgaaattgttgcatgttgcgtttatatttttgttcagtatagacaCATTTGAATTCCCTGTGATATTATCACTTAGCCTAACGACATCTGCATATCCTCTTTCGTGCTGCATCAATTGGTAAGCAACTAGACAATACCTTTATTGGCAGGTCACAGACCAATTTAATTAGATAAAGATTTATCATCAGTTTGGTCCAGAGATTGACCTTCTGTCAACAGTCAGATAATAATATTATTTTGATTCATTAAAGGACATTACAGAGATACTTTGCATATGACTTACTTTGATTGAGAGCAAGAGCTGGGGCGTAGATGACCATACCAGTGTACAGGGCCTGAAACAAAATCAGCCAATAGTTGATGGATGTAAACATATGCTTGATGCACATTCATAAAGCGGAATGTTTACCTTAGATGCCCAGATTGGCTTCCTGAAATCAGGCAATGGAAAAAAGGACAAGGACAAATGTTGCCATTTTCTGTAGTTAATGCATTATTGAGATGTTTGTTTCCACCATATCCTTTGGAAAACATTAGCTTCATTAAGATCTACCCTTTTGCCCCATTTTCGTGATGTTAACTGAATGTTTACCGTTTGTATGATGTACATGGTGGTCCCGATCACCCGAATCAACTTGTTGAAACGCATCTCCAGATACTAgagaaaaaataaacatttcagtCAAACCTGGCCTGATTTCATTGGCTTTTTACACTTATAAATCTTTTTTCCTAGTCAGGAAGTGATGATGAAGAAAGATTCATAGACTTTTCAGTAGTCTGACTATCTGCAGGTCTACATCTGTTTTGTTCAAGTCATAAATGGTtgcaggttgatgtttattggGATGAATCTGGTCCTGGAGGCAGATCTGAGCGATATCCACTGGATGTGCCAGCTGCAGCCAAAATTGGCTATATATATTGTAAAAAATTctgaaaacaaacatttgctttttttcaaatattaatttaaggttagcattaggcataaggttagcagtgtggtaaaGGTTATTtttaggtttaaaatctgattttatgactttgtgtcaATGCCAGCCAGTGATTaccctgcagagctgcctccagtacatgactcatcccaataaatgccaacctgctaaATGATTGCTTGGTGCACAAAACTAATTAAATACCTGTAATTACTTTTATAGCAACTAGTCACATATTTTTAGTAGGTAAAGTCCCCAGATGCTGAATGTAACAGATGTAACATCTTGGCACCCCTCCTGGATTAGATTGTTTTCACGGATCACTGATTAATTATTAGTTACATTACAACTgctggcgcagcggtctaaggctgcattactacagatcctggttcgataccgggctgtgtcgcagccggccgtgcccgggagacccatgaggcgacacacaattgccccagtgtcgtccgggttaagggagggtttggctggccgggatgtccttgtcccatcgcgctctagcgactctagcgactcctgtggcaggctggaCGCATGGACGCTGACAcagtcaccaggtgtacggtgtttcctccgacacattggtgcggctggcttccgggttaagtatgcattgtgtcaagaaacagCGGGGCTTGgcggggttgtgtttcggaggacgcacagctctcgaccttcgtctctgcCGAATCCGTATGGatgttgcagcgatgggacaagaccgtaactaccaaatggggagaaaaaggggtaaaatatttTAGAGCAAACCCTCTCATCTTCACCCCCCTTGCTATCATCTTAATTCATACCCCTATAACTTTATCTCAATCCACCTTGCTTACACCGATAGGAATCATCAAGCTATTTGCACCTCAAATGTTGTAATGTATTTGACATACTGTGTATGTATTTGACCCAGGTGGGTCTGACCCAGCCTGGTATATCTTACAGTACCTCGTAGGTGCTGGTGATGCCCAGGTGGATATGACCCAGCCTGGTATATCTTACAGTACCTCGTAGGTGCTGGTGATGCCCAGGCGGTAGAAGAGAGGGACGAAGATTTCAGCGGTGATGATGGACATGATGGCATAGGAGATGCCAAATATCCAGAAGGCCGCCCCAAACCGATAGGCCTCTGCTGGAGTGCCGATCACGGTGATGCCAGACATGAAGCTGGCAGTGAGGGACATGGCGACGGGCACCGCTGTCATCTGACGACCCCCCAGCAGAAACTCATCGCTGCTGGTGTTCTTGCGGCCCCGGATGGCTTGGAACAGGCCGATGCCGGCCGCCCCCAGTACTGTCCCCACAAACACCACATAGTCCCACACAGAGAACGAGGCCACTGGGCCCCCTGTACCCGTCGTCATGGTTAATGAGTACAGAAGAGATCCCTCCGGCAGAGACCAACACTTATCTAATCTTCACTATCTAACCACTTTCACCCACTGGTCGCCACTTAGATCTTAGAGGTTGAATGTTAGGCAATGTTGCTAATGTTTAATTTCCTTTCTTTCCAATGCACACTATTTTTCCTATTTACAATTTAATCAGATAAATTGTATGTGAATTACAGAACAGGTGTAGCATTGATATTTAACGTTCACTAAGTAGAAAAGGAATGTTTGATTTGATCAAGAATGTCAAATAAATCAATTTTGTTCAAATTGAGTCCAACCTTTTTTCAATATTCCAAGAAAACAAAACAATAGCAAATAAATTCTCAGTCAACTAGATAAGCACCTCAGAAATGTATTAATGCAGATAACATGTTTGGATTATTGCAGTTCTTTGACACTTACAATAGACATCCACAATTGAAAGAAACATCCTTATACAAACGTCTGAGAATTCCAAGAACAAATGTCCAATATTCCTATTTGTTAAGTCTTCCGTACTTGTTGAGGTTGAATAAAGTTGAGAATTACTAGAAATGCATCCTCCTGTTTAGCAAGACTTCCTTGTGTGGTCCCCTTATCCTAACAAAAGCATGGAAGAACACACTCTTGGTGTCGGCTAACCATAAACACACCTTTAGTTAATCATCACCCAAGGACAAAATATACAGAATTCACTGCACTGCCTACCAAGATTCTAAAACGGAATGATCATTATATCTGACTTGATGAAGTGTGTTTGGCCCGCCTTCCGATCTACCATTAAATAGAATGGTTGGTATAGTTCTAGAACACCATGTATGGTCAGCCTGACACAGTTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1710206 True 3399 lncRNA 0.42 2 81884283 81887740

Neighbor

gene id symbol gene type direction distance location
LOC118940109 NA coding upstream 21804 81861551 ~ 81862479 (+)
LOC110494698 LOC106566043 coding upstream 36743 81828571 ~ 81847540 (+)
LOC110494696 LOC106582736 coding upstream 282122 81432188 ~ 81602161 (+)
LOC118940108 NA coding upstream 490683 81392702 ~ 81393600 (+)
LOC110494694 LOC106566046 coding upstream 503496 81374533 ~ 81380787 (+)
LOC110494700 tshb coding downstream 2817 81890557 ~ 81892633 (+)
LOC110494701 LOC106566040 coding downstream 17028 81904768 ~ 81911784 (+)
LOC110495197 NA coding downstream 38911 81926651 ~ 81927921 (+)
LOC118940161 NA coding downstream 136327 82024067 ~ 82026625 (+)
LOC110494703 LOC106566038 coding downstream 149833 82037573 ~ 82047285 (+)
G1496027 NA non-coding upstream 6204 81873661 ~ 81878079 (+)
G1496026 NA non-coding upstream 11167 81869414 ~ 81873116 (+)
G1496024 NA non-coding upstream 16839 81866444 ~ 81867444 (+)
G1496010 NA non-coding upstream 34388 81849580 ~ 81849895 (+)
G1496031 NA non-coding downstream 299 81888039 ~ 81888262 (+)
G1496040 NA non-coding downstream 12444 81900184 ~ 81900390 (+)
G1496042 NA non-coding downstream 14173 81901913 ~ 81902124 (+)
LOC110494705 LOC106566037 non-coding downstream 153730 82041470 ~ 82063859 (+)
G1496261 NA non-coding downstream 179000 82066740 ~ 82067138 (+)
G1495362 NA other upstream 546120 81337017 ~ 81338163 (+)
G1495346 NA other upstream 590357 81293440 ~ 81293926 (+)
tusc2 tusc2 other upstream 2498846 79382417 ~ 79387551 (+)
G1496351 LOC106566032 other downstream 275466 82163138 ~ 82169750 (+)
G1497918 NA other downstream 1726525 83614265 ~ 83634495 (+)
LOC110494749 LOC106566083 other downstream 1992192 83879805 ~ 83890067 (+)
G1498583 NA other downstream 2238097 84125837 ~ 84174177 (+)
G1498913 NA other downstream 2608189 84495929 ~ 84497398 (+)

Expression


Co-expression Network