G1496351 (LOC106566032)


Basic Information

Item Value
gene id G1496351
gene name LOC106566032
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 82163138 ~ 82169750 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1710575
TACTGTTCTTGATATCTTATAATCCAACAAGGTTTCTTTTTTTTAGCATAGATCCAACACATTAATCCCAACAGAGCCACTGCACGCAAAATACATTCGCCCATATAAAAAAAATGTGGTCGCTGCCAAAAGGAACACTACTGTTCTGCCAGACTTCAGGTTTGGCGCCGGCCAAGGTCAATATCTCAGTGAGCTACACAATGTGTTTGTGTCATTGTAACATTCACTTTCCCCCCCCTTTAACGGTCCTACAAAATTGAACGTTAATGATAAA
>TU1710570
CAACAGAGCCACTGCACGCAAAATACATTCGCCCATATAAAAACAAATGTGGTCGCTGCCAAAAGGAACACTACTGTTCTGCCAGACTTCAGGTTTGGCACCGGTCAAGGTCAATATCTCAGTGAGCTACACAATGTGTTTGTGTCATTGTAACATTCACTTTCCCCCCCCTTTAACGGTCCTACAAAATTGAACGTTAATGATAAA
>TU1710571
CAACAGAGCCACTGCACGCAAAATACATTCGCCCATATAAAAACAAATGTGGTCGCTGCCAAAAGGAACACTACTGTTCTGCCAGACTTCAGGTTTGGCGCCGGCCAAGGTCAATATCTCAGTGAGCTACACAATGTGTTTGTGTCATTGTAACATTCACTTTCCCCCCCCTTTAACGGTCCTACAAAATTGAACGTTAATGATAAA
>TU1710572
CAACAGAGCCACTGCACGCAAAATACATTCGCCCATATAAAAACAAATGTGGTCGCTGCCAAAAGGAACACTACTGTTCTGCCAGACTTCAGGTTTGGCACCGGTCAAGGTCAATATCTCAGTGAGCTACACAATGTGTTTGTGTCATTGTAACATTCACTTTCCCCACCCTTTAACGGTCCTACAAAATTGAACGTTAATGATAAACATGTAAACAAAAACAGACAAGTGGCTTTCTTCTAACCATTTCCATTTTATTATTGGTTTTTCAACCTCTAACGGAAGGAAGATTAATCAAAGAGTCCAAATCCCATGTCATCATCAGATCCCTCTTCAgattcctctttctcctcctttttCTCTTCCGCAGCAGTAGGAGAAACTCCAGCTGCAGCAGacccagcagcagcaggagccgCCACAGCACCACCTGCTGGCACGGAGGCCAATTTAGAGAGACCAGAGTTCATGACTTCATTGATATCTTTTCCATTCAATTCATTGACAACCTTGTCTAGGCGCTCATCTTCGGCCTCGATTCCCACACTCCCCAAAATGGTCTTGATATCCTTGGAGGAGGGGCTGGTGTTGCCACCGAGCACAGCCAGGAGGTAAGCGGACACGTAACGCATTTTTAAGTCTGTACAGACACGAAACGTCGGTCACGCTGAATCTTCCGGAAGAGAAAGAGGGTCGTCACCGGAAGGTAGAGGAATTTGTAGTGCCCAGATATTA
>TU1710574
CAACAGAGCCACTGCACGCAAAATACATTCGCCCATATAAAAACAAATGTGGTCGCTGCCAAAAGGAACACTACTGTTCTGCCAGACTTCAGGTTTGGCACCGGTCAAGGTCAATATCTCAGTGAGCTACACAATGTGTTTGTGTCATTGTAACATTCACTTTCCCCACCCTTTAACGGTCCTACAAAATTGAACGTTAATGATAAACATGTAAACAAAAACAGACAAGTGGCTTTCTTCTAACCATTTCCATTTTATTATTGGTTTTTCAACCTCTAACGGAAGGAAGATTAATCAAAGAGTCCAAATCCCATGTCATCATCAGATCCCTCTTCAgattcctctttctcctcctttttCTCTTCCGCAGCAGTAGGAGAAACTCCAGCTGCAGCAGacccagcagcagcaggagccgCCACAGCACCACCTGCTGGCACGGAGGCCAATTTAGAGAGACCAGAGTTCATGACTTCATTGATATCTTTTCCATTCAATTCATTGACAACCTGTGGAGACAAATTCAGGTTTTTATTGTCACCAGTTACTATGTAAACCAAGGCCTCTGTCCTGCAATAGTGTCAAAGTACACAAAAGTAACTCAGTTCATCTTCTCAAAATACAAGACAGCCTCACCCTAAATGGAGGCATACCTTGTCTAGGCGCTCATCTTCGGCCTCGATTCCCACACTCCCCAAAATGGTCTTGATATCCTTGGAGGAGGGGCTGGTGTTGCCACCGAGCACAGCCAGGAGGTAAGCGGACACGTAACGCATTCTGCaagTTTAAGTCTGTACAGACACGAAACGTCGGTCACGCTGAATCTTCCGGAAGAGAAAGAGGGTCGTCACCGGAAGGTAGAGGAATTTGTAGTGCCCAGATATTA

Function

NR:

description
60S acidic ribosomal protein P2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1710575 False 274 lncRNA 0.40 2 82163138 82165080
TU1710570 False 207 lncRNA 0.43 2 82163206 82165080
TU1710571 False 207 lncRNA 0.44 2 82163206 82165080
TU1710572 False 735 TUCP 0.46 5 82163206 82169750
TU1710574 True 886 lncRNA 0.45 4 82163206 82169750

Neighbor

gene id symbol gene type direction distance location
LOC110494708 LOC106566034 coding upstream 7249 82152171 ~ 82155889 (+)
LOC110494706 LOC106566035 coding upstream 57339 82102024 ~ 82105799 (+)
LOC110494705 LOC106566037 coding upstream 99279 82041470 ~ 82063859 (+)
LOC110494703 LOC106566038 coding upstream 115853 82037573 ~ 82047285 (+)
LOC118940161 NA coding upstream 136513 82024067 ~ 82026625 (+)
LOC110493273 LOC106566076 coding downstream 49191 82218941 ~ 82220659 (+)
LOC110494711 LOC106566069 coding downstream 57028 82226778 ~ 82233962 (+)
LOC110494713 LOC106566029 coding downstream 94310 82264060 ~ 82275994 (+)
LOC110494715 tead3 coding downstream 107600 82277350 ~ 82353407 (+)
LOC110494716 LOC106566027 coding downstream 221693 82391443 ~ 82403512 (+)
G1496333 NA non-coding upstream 36133 82126669 ~ 82127005 (+)
G1496330 NA non-coding upstream 37641 82124947 ~ 82125497 (+)
G1496280 NA non-coding upstream 49330 82113544 ~ 82113808 (+)
G1496279 NA non-coding upstream 54893 82108045 ~ 82108245 (+)
G1496276 NA non-coding upstream 55758 82106757 ~ 82107380 (+)
G1496443 NA non-coding downstream 54915 82224665 ~ 82224904 (+)
G1496464 NA non-coding downstream 76635 82246385 ~ 82246616 (+)
G1496466 NA non-coding downstream 78452 82248202 ~ 82248401 (+)
G1496471 NA non-coding downstream 89702 82259452 ~ 82259693 (+)
G1496455 NA non-coding downstream 106684 82276434 ~ 82276887 (+)
LOC110494698 LOC106566043 other upstream 330037 81828571 ~ 81847540 (+)
LOC110494696 LOC106582736 other upstream 560981 81432188 ~ 81602161 (+)
G1495362 NA other upstream 824975 81337017 ~ 81338163 (+)
G1495346 NA other upstream 869212 81293440 ~ 81293926 (+)
tusc2 tusc2 other upstream 2777701 79382417 ~ 79387551 (+)
G1497918 NA other downstream 1444515 83614265 ~ 83634495 (+)
LOC110494749 LOC106566083 other downstream 1710182 83879805 ~ 83890067 (+)
G1498583 NA other downstream 1956087 84125837 ~ 84174177 (+)
G1498913 NA other downstream 2326179 84495929 ~ 84497398 (+)
G1498912 NA other downstream 2346367 84516117 ~ 84567678 (+)

Expression


Co-expression Network