G1496689


Basic Information

Item Value
gene id G1496689
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 82235128 ~ 82245987 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1710947
TGTCAGAAAAAGTGTACAGGAGAGGTGACAGGAAGACAGCTCCTCTCTCTTACTTACCACGGCAGCCATTTTCTTTTGTCCAATGAAGTCAGTGAGTGAGAAGCCTGGGATTTGAACAGTTGATAATAAGGATCCAGCTTTTTGCTGATTTAAACTTTTTAATGTTTatTCCCAGCAGAAGTCCTGACCTCCTCTCCAGGTTGATGATAAATTGAGCACCTGTCCTTGAGACTGAGGTAGTAGATTGAATAGTTGTGGGGTATATGTCCTCCCTCTGACATAACTATACAATCTACTGTCTTTCCTAAGGAGACAGACCAATCGTCAATACCCCTGAAGCTAGACCATTTTCCCCTGGCTGTCCCATCCATCTCCCCAGCCTGGACACCTGCCCGCAACCTGTCTGTGTTCTGTGGGGTAGTTAACAATTAGCATATCACATCCATTCACTGAATGTTCCAGGACAACATGAGGATGTGCAACATTTCCTCTGTTAGACCACCCAATCCTTTATTTGGTTTACAGCGATTGGGGCCAATTGTGATATGGCCCTATTGTGTTTGAGTGAAAGTGTGCTTTagggtgagtgtgtttgtgttgtcgcCTCTCGCTGTATGTGTTTGAATGACATTCCCCCCTCATCCGTCAGCCTTTTAGGTGAGTGTGTCCTGGCGAGGTGAGGTAGTAGGTTGTATAGTTTGTGAAGGGATAGAATCCTATTCAGGTGATAACTATACAGTCTATTGCCTTCCTTGAGAGGCACAATGACCGTCCGCAGCGATGAGGAACTCCACAGAAAACTGCTTGTTGAATTCCTCTGCATTTTATGCAATCTTACTGTGGAAAAGCAACAGAGGAAGCACTGGTGTGTTTATTACAGTTTTCTAGCGTCACCTAGTGGCCAAGGAGCAGCAGGACTCCAGAGACATTCGACCGGAAGGTTCCCGTAGGCAGGGGTGGAAAGAGAACTGAAATATCCTACTCAAGGAGGAGTACTGTTACTTTAAGCAATGCAAAATAAAGTGCATAAAGAATAAAGTTGGCAGACTTCAATAAACTTCATATTCCAGACATAAACATGTCTCATTCTTTCACCCTTTCAATCCATCATTCACCCCTCTGTTACATCTTACTTATCCATGGGACCGGCTGACATTCACTCACTCATCCATTCATACTCTTTCCCTCGcccactcactccctcactcacaaACTATCTTTTCCCTCACTcaccaggggtggaaagagtaCTGAAATATATTACTCAAGTAGAAGTACTGTTACTTtgaaaatacaacaacaacaaaaaagtactCAGAAAAGCTACTCAATTACAGTAACGAGAGTAGTTGTAATGAGTTACTTTACACCTCTGCTCATATGTTCACGACTCAGAGCAGAAAGTAAAGAATATGAAATTAACTTAATAGAGAATGCATGAGTTTGACATAATCtaaactacagtggggcaaaaagtatttagtcagccaccaattgtgcaatttctcccacttaaaaagatgagagaggcctgtaattttcatcataagtacacttcaactatgacagacaaaatgagaaaaataaatccagaaaatcacattgtaggatttttaattaatttatttgcaaattatggaggaaaataagtatttggtcacctacaaacaagcaatatttctaactctcacagacctgtaacttcttctttaagaggctcctctgtcctccactcgttacctgtattaatggcacctgtttgaacttgttatcagtataaaagacacctgtccacaaccttaaacagtcacactccaaactccactatggccaagaccaaagagctgtcaaaggacaccagaaacaaaattgtagacctgcaccaggctgggaagactgaatctacaataagtaagcagcttggtttgaagaaatcaactgtgggagcaattattaggaaatggaagacatacaagaccactgataatctccctcgatctggggctccacgcaagatctcaccctgtggggtcaaaatgatcacaagaacggtgagcaaaaatcccagaaccacacggggggacctagtgaatgacctgcagagagctgggatcaaagtaacaaagcctaccatcagtaacacactacgccgcca
>TU1710950
AAAGGCTTCACTGCACGCTCTGCAGTCTTtaactcctcctcttcttctcctcaaaTGCAGCGGAGATCTCCAGCATTGACTTGTTTTGATATAATAAGTCTGGCAAAGCTTTTTGGGGTGCAAGAACCGATatTCCCAGCAGAAGTCCTGACCTCCTCTCCAGGTTGATGATAAATTGAGCACCTGTCCTTGAGACTGAGGTAGTAGATTGAATAGTTGTGGGGTATATGTCCTCCCTCTGACATAACTATACAATCTACTGTCTTTCCTAAGGAGACAGACCAATCGTCAATACCCCTGAAGCTAGACCATTTTCCCCTGGCTGTCCCATCCATCTCCCCAGCCTGGACACCTGCCCGCAACCTGTCTGTGTTCTGTGGGGTAGTTAACAATTAGCATATCACATCCATTCACTGAATGTTCCAGGACAACATGAGGATGTGCAACATTTCCTCTGTTAGACCACCCAATCCTTTATTTGGTTTACAGCGATTGGGGCCAATTGTGATATGGCCCTATTGTGTTTGAGTGAAAGTGTGCTTTagggtgagtgtgtttgtgttgtcgcCTCTCGCTGTATGTGTTTGAATGACATTCCCCCCTCATCCGTCAGCCTTTTAGGTGAGTGTGTCCTGGCGAGGTGAGGTAGTAGGTTGTATAGTTTGTGAAGGGATAGAATCCTATTCAGGTGATAACTATACAGTCTATTGCCTTCCTTGAGAGGCACAATGACCGTCCGCAGCGATGAGGAACTCCACAGAAAACTGCTTGTTGAATTCCTCTGCATTTTATGCAATCTTACTGTGGAAAAGCAACAGAGGAAGCACTGGTGTGTTTATTACAGTTTTCTAGCGTCACCTAGTGGCCAAGGAGCAGCAGGACTCCAGAGACATTCGACCGGAAGGTTCCCGTAGGCAGGGGTGGAAAGAGAACTGAAATATCCTACTCAAGGAGGAGTACTGTTACTTTAAGCAATGCAAAATAAAGTGCATAAAGAATAAAGTTGGCAGACTTCAATAAACTTCATATTCCAGACATAAACATGTCTCATTCTTTCACCCTTTCAATCCATCATTCACCCCTCTGTTACATCTTACTTATCCATGGGACCGGCTGACATTCACTCACTCATCCATTCATACTCTTTCCCTCGcccactcactccctcactcacaaACTATCTTTTCCCTCACTcaccaggggtggaaagagtaCTGAAATATATTACTCAAGTAGAAGTACTGTTACTTtgaaaatacaacaacaacaaaaaagtactCAGAAAAGCTACTCAATTACAGTAACGAGAGTAGTTGTAATGAGTTACTTTACACCTCTGCTCATATGTTCACGACTCAGAGCAGAAAGTAAAGAATATGAAATTAACTTAATAGAGAATGCATGAGTTTGACATAATCtaaactacagtggggcaaaaagtatttagtcagccaccaattgtgcaatttctcccacttaaaaagatgagagaggcctgtaattttcatcataagtacacttcaactatgacagacaaaatgagaaaaataaatccagaaaatcacattgtaggatttttaattaatttatttgcaaattatggaggaaaataagtatttggtcacctacaaacaagcaatatttctaactctcacagacctgtaacttcttctttaagaggctcctctgtcctccactcgttacctgtattaatggcacctgtttgaacttgttatcagtataaaagacacctgtccacaaccttaaacagtcacactccaaactccactatggccaagaccaaagagctgtcaaaggacaccagaaacaaaattgtagacctgcaccaggctgggaagactgaatctacaataagtaagcagcttggtttgaagaaatcaactgtgggagcaattattaggaaatggaagacatacaagaccactgataatctccctcgatctggggctccacgcaagatctcaccctgtggggtcaaaatgatcacaagaacggtgagcaaaaatcccagaaccacacggggggacctagtgaatgacctgcagagagctgggatcaaagtaacaaagcctaccatcagtaacacactacgccgcca
>TU1710948
caggggaaagagagggatgtgGAAACgcgctctcctctcttttcttcccacCCTTTTTTCTCCACCAACTTGGCCTGTTCCCCTCGGGTCATGTCTGCCGAGATCCCTGCTCTGTCCTTTACAAAATCTACCTCCAGatTCCCAGCAGAAGTCCTGACCTCCTCTCCAGGTTGATGATAAATTGAGCACCTGTCCTTGAGACTGAGGTAGTAGATTGAATAGTTGTGGGGTATATGTCCTCCCTCTGACATAACTATACAATCTACTGTCTTTCCTAAGGAGACAGACCAATCGTCAATACCCCTGAAGCTAGACCATTTTCCCCTGGCTGTCCCATCCATCTCCCCAGCCTGGACACCTGCCCGCAACCTGTCTGTGTTCTGTGGGGTAGTTAACAATTAGCATATCACATCCATTCACTGAATGTTCCAGGACAACATGAGGATGTGCAACATTTCCTCTGTTAGACCACCCAATCCTTTATTTGGTTTACAGCGATTGGGGCCAATTGTGATATGGCCCTATTGTGTTTGAGTGAAAGTGTGCTTTagggtgagtgtgtttgtgttgtcgcCTCTCGCTGTATGTGTTTGAATGACATTCCCCCCTCATCCGTCAGCCTTTTAGGTGAGTGTGTCCTGGCGAGGTGAGGTAGTAGGTTGTATAGTTTGTGAAGGGATAGAATCCTATTCAGGTGATAACTATACAGTCTATTGCCTTCCTTGAGAGGCACAATGACCGTCCGCAGCGATGAGGAACTCCACAGAAAACTGCTTGTTGAATTCCTCTGCATTTTATGCAATCTTACTGTGGAAAAGCAACAGAGGAAGCACTGGTGTGTTTATTACAGTTTTCTAGCGTCACCTAGTGGCCAAGGAGCAGCAGGACTCCAGAGACATTCGACCGGAAGGTTCCCGTAGGCAGGGGTGGAAAGAGAACTGAAATATCCTACTCAAGGAGGAGTACTGTTACTTTAAGCAATGCAAAATAAAGTGCATAAAGAATAAAGTTGGCAGACTTCAATAAACTTCATATTCCAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1710947 False 2155 TUCP 0.42 2 82235128 82240264
TU1710950 False 2119 TUCP 0.43 2 82235128 82245987
TU1710948 True 1041 lncRNA 0.46 2 82236212 82245221
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Neighbor

gene id symbol gene type direction distance location
LOC110495198 LOC106566076 coding downstream 27601 82205435 ~ 82208611 (-)
LOC110493272 NA coding downstream 34232 82201505 ~ 82201980 (-)
LOC110494710 LOC106566032 coding downstream 66411 82163141 ~ 82169801 (-)
LOC110494709 LOC106566033 coding downstream 73116 82156033 ~ 82163096 (-)
LOC118940160 NA coding downstream 247816 81986912 ~ 81988396 (-)
LOC110494717 LOC106566026 coding upstream 184801 82430022 ~ 82443873 (-)
csrp1 csrp1 coding upstream 204488 82449709 ~ 82455853 (-)
LOC110494720 LOC106566021 coding upstream 473923 82719144 ~ 82729139 (-)
zgc:66479 LOC106566020 coding upstream 487737 82732958 ~ 82749658 (-)
LOC110493276 LOC106566018 coding upstream 525062 82770283 ~ 82800894 (-)
G1496440 NA non-coding downstream 13697 82222307 ~ 82222515 (-)
G1496439 NA non-coding downstream 14547 82221452 ~ 82221665 (-)
G1496396 NA non-coding downstream 86050 82145162 ~ 82150162 (-)
G1496337 NA non-coding downstream 106754 82129190 ~ 82129458 (-)
G1496318 NA non-coding downstream 147773 82088224 ~ 82088439 (-)
G1496691 NA non-coding upstream 2087 82247308 ~ 82247517 (-)
G1496699 NA non-coding upstream 32019 82277240 ~ 82278308 (-)
G1496770 NA non-coding upstream 162435 82407656 ~ 82407884 (-)
G1496776 NA non-coding upstream 168920 82414141 ~ 82414374 (-)
G1496798 NA non-coding upstream 214004 82459225 ~ 82459536 (-)
G1496390 NA other downstream 61360 82172469 ~ 82174852 (-)
G1495552 NA other downstream 909099 81326685 ~ 81327113 (-)
G1495538 LOC106566048 other downstream 921897 81311747 ~ 81314315 (-)
G1495222 NA other downstream 1120974 81110445 ~ 81115238 (-)
LOC110494689 LOC106566051 other downstream 1132298 81090497 ~ 81103942 (-)
G1496921 NA other upstream 409251 82629246 ~ 82661638 (-)
G1498077 NA other upstream 1360022 83605243 ~ 83605753 (-)
G1498442 NA other upstream 1737120 83982341 ~ 83982894 (-)
G1498522 NA other upstream 1805789 84051010 ~ 84057392 (-)
G1499671 NA other upstream 2975904 85221125 ~ 85223119 (-)

Expression

G1496689 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
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G1496689 Expression in each Bioproject

Bar chart with 21 bars.
G1496689 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G134589 NA non-coding CI01000026 null 12359897 ~ 12360270 (-)
mexican tetra (Astyanax mexicanus) G113267 NA non-coding NC_035909.1 CM008312.1 23686273 ~ 23686831 (-)