G1497171 (LOC106566017)


Basic Information

Item Value
gene id G1497171
gene name LOC106566017
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 82862104 ~ 82862674 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1711512
GATTCGAGCAGAATTCCCGGCTCTCACAACCATGAAGCTCTTCATTTTGCGATCAGTGAAATGTGGTCTCACTTGGGGGGGGCATTGCAATGATGTAGTTGTCCAAGCCTTTGGGCTCCCCTTCTCCCCCGTCGTTGGTGGCAATCACTCTCACCCAGTACATGGCCATTGACTTAAGACCCAAAATGTTATAGGAGGTAATGATGATGGGGTTATTGTTACAGCGGTCCCACTCTGGGTTTGCTGCTGGTCTGATCTCCACAAAGTATCCCTTGGCTTCATCTTGGACCCCTTCCTCCTCTATGGGTTTAGTCCAACCCAGGGACAAGGTGGTGTAGGTGGAGTCTGTCACCTTCAGGTCATTGATTTGACCGGGGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1711512 True 378 lncRNA 0.51 2 82862104 82862674

Neighbor

gene id symbol gene type direction distance location
LOC110494719 LOC106566022 coding upstream 144656 82668822 ~ 82717448 (+)
LOC110494718 LOC106566023 coding upstream 200460 82636385 ~ 82661644 (+)
LOC110493275 LOC106566024 coding upstream 226102 82533521 ~ 82636002 (+)
LOC118940498 LOC106566024 coding upstream 343299 82461687 ~ 82518805 (+)
LOC110494716 LOC106566027 coding upstream 458592 82391443 ~ 82403512 (+)
nudt3 LOC106566013 coding downstream 384056 83246730 ~ 83264337 (+)
LOC110494727 LOC106566012 coding downstream 406973 83269647 ~ 83311364 (+)
trnae-uuc-8 NA coding downstream 575411 83438085 ~ 83438156 (+)
trnae-uuc-9 NA coding downstream 576751 83439425 ~ 83439496 (+)
trnar-acg-8 NA coding downstream 577807 83440481 ~ 83440553 (+)
G1497106 NA non-coding upstream 57694 82803680 ~ 82804410 (+)
G1497096 NA non-coding upstream 66776 82795065 ~ 82795328 (+)
G1497095 NA non-coding upstream 67098 82794768 ~ 82795006 (+)
G1496996 NA non-coding upstream 96678 82764851 ~ 82765426 (+)
G1496971 NA non-coding upstream 138690 82722897 ~ 82723414 (+)
G1497173 LOC106566017 non-coding downstream 1306 82863980 ~ 82864266 (+)
G1497175 LOC106566017 non-coding downstream 3564 82866238 ~ 82866512 (+)
G1497176 LOC106566017 non-coding downstream 4801 82867475 ~ 82867700 (+)
G1497166 NA non-coding downstream 11896 82874570 ~ 82933448 (+)
G1497181 NA non-coding downstream 18034 82880708 ~ 82888051 (+)
G1496351 LOC106566032 other upstream 692354 82163138 ~ 82169750 (+)
LOC110494698 LOC106566043 other upstream 1029003 81828571 ~ 81847540 (+)
LOC110494696 LOC106582736 other upstream 1259947 81432188 ~ 81602161 (+)
G1495362 NA other upstream 1523941 81337017 ~ 81338163 (+)
G1495346 NA other upstream 1568178 81293440 ~ 81293926 (+)
G1497918 NA other downstream 751591 83614265 ~ 83634495 (+)
LOC110494749 LOC106566083 other downstream 1017258 83879805 ~ 83890067 (+)
G1498583 NA other downstream 1263163 84125837 ~ 84174177 (+)
G1498913 NA other downstream 1633255 84495929 ~ 84497398 (+)
G1498912 NA other downstream 1653443 84516117 ~ 84567678 (+)

Expression


Co-expression Network