G1498010


Basic Information

Item Value
gene id G1498010
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 83434570 ~ 83524555 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1712430
gttatcagacacgttatccattgcgccactggccccacgtctaagctgaagtcaggacacacctaggccagtgtacacagtcatagcttctgtcaccgacaaggttccttgggatttctgttacagatgcaaatcttaatttgatcctcctgttgttgcatgaatattactgcagagcaagaaatgcagccatgaagtctattcaacgtttaaaatgccttgtataatttgaatctacataacatgtcacatttcctgttgctgagggaatattgttgtgttgtgtgaaactgctgccagttaaaatgcagtatctgttgttacacaagtgcatcccaaacaacaagatattctttcccataccgggagttgaacccgggagacctgggtgaaaaccaggaatcctaaccggtagaccatatgggaagacacatacttaaaatacacatcacagacaaatctttaaatgttgacattatgcctgttggattaaaagctacatcttttttttctctgagatgttggggaatgtccagatgaaatcagtctaaaatgagtttgaagtgagaacagccagaagcactgaaaagtattcagtatcaatcccggcttgaattcaatcaattaaattaagtattgagccagccaggagtctaacctagaatcttctgatccgtagtcagacacgttatccattgcgccactggccccacgtctaagctgaagtcaggtcacagctagaccagtgtacacagtcattgcgtctgtcaacaacaaggttccttggttttctgtttcagatgcatatcttaatttgatcctcctgttgttgcatgaattttactgcagagcaagaaatgcaaacttgaagtgtattcaatgtttaaaaagtcttgtaaattatgaatctacaaaacatgtcacatttgctgttgctgagggaatattgttgtgttgtgtgattctgctgccagttaaaatgtggtatctgttcttacacaagtgcatcccaaatgacaagatgttctttcccatactgggagttcaacccgggcgaaaaccaggaatcctaaatgccagaccatatgggaagacagttacttaaaaaaacatcacagacaaatccataaacgttgaaatgatgcttgttgtattacaagctccatcttttttctcagagatgttggagaaaagtcccatataaaatcagtctaaaatgtgtttgaatcgagaactgccagacacaatgaaaagtatacagt
>TU1712428
gggaatattgttgtgttgtgtgaaactgctgccagttaaaatgcagtatctgttgttacacaagtgcatcccaaacgacaagatattctttcccataccgggagttgaacccgggccaccttggtgaaaaccaggaatcctaaccgctagaccatatgggaagacacatacttaaaatacacatcacagacaattctttaaatgttgacattatgcctgttggattaaaagctacatctttttttctctgagatgttggggaatgtccagatgaaatcagtctaaaatgagtttgaagtgagaacagccagaggaactgaaaagtatacagtatcaatcccggcttgaattcaatcaattaaattaagtattgagccagccaggagtctaacctagaatcttctgatccgtagtcagacacgttatccattgcgccactggccccacgtctaagctgaagtcaggtcacagctagaccagtgtacacagtcattgcgtctgtcaacaacaaggttccttggttttctgtttcagatgcatatcttaatttgatcctcctgttgttgcatgaattttactgcagagcaagaaatgcaaact
>TU1712429
gttatcagacacgttatccattgcgccactggccccacgtctaagctgaagtcaggacacacctaggccagtgtacacagtcatagcttctgtcaccgacaaggttccttggttttctgtttcagatgcatatcttaatttgatcctcctgttgttgcatgaattttactgcagagcaagaaatgcagccatgaagtctattcaacgtttaaaatgccttgtataatttgaatctacataacatgtcacatttcctgttgctgagggaatattgttgtgttgtgtgaaactgctgccagttaaaatgcagtatctgttgttacacaagtgcatcccaaacgacaagatattctttcccataccgggagttgaaaccgggccacctgggtgaaaaccaggaatcctaaccgctagaccatatgggaagacacatacttaaaatacacatcacagacaaatctttaaatgttgacattatgcctgttggattaaaagctacatcttttttttctctgagatgttggggaatgtccagatgaaatcagtctaaaatgagtttgaagtgagaacagccagaagcactgaaaagtatacagtatcaatcccggcttgaattcaatcaattaaattacgtattgagccagccaggagtcgaacctagaatcttctgatccgtagtcagacacgttatccattgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1712430 False 1262 lncRNA 0.40 4 83434570 83524555
TU1712428 False 600 lncRNA 0.41 2 83515682 83524290
TU1712429 True 698 lncRNA 0.41 3 83517840 83524555

Neighbor

gene id symbol gene type direction distance location
LOC110494731 LOC106566009 coding downstream 25855 83397640 ~ 83408715 (-)
LOC110494730 LOC106566007 coding downstream 39688 83388660 ~ 83394882 (-)
LOC110494732 LOC106566008 coding downstream 47239 83385666 ~ 83387331 (-)
LOC110494729 LOC106566010 coding downstream 57964 83367244 ~ 83376606 (-)
LOC110494728 LOC106566011 coding downstream 90719 83323505 ~ 83343851 (-)
LOC110494733 LOC106566096 coding upstream 7957 83532512 ~ 83553720 (-)
si:dkey-261l7.2 LOC106566092 coding upstream 84287 83608842 ~ 83629064 (-)
ccdc66 LOC106566088 coding upstream 313296 83837851 ~ 83860046 (-)
LOC110494754 LOC106566081 coding upstream 507810 84032365 ~ 84046538 (-)
LOC110493281 LOC106593201 coding upstream 1166230 84690785 ~ 84713397 (-)
G1497901 NA non-coding downstream 6462 83427901 ~ 83428108 (-)
G1497899 NA non-coding downstream 13931 83419988 ~ 83420639 (-)
G1497891 NA non-coding downstream 39399 83394883 ~ 83395171 (-)
G1497889 NA non-coding downstream 41283 83393045 ~ 83393287 (-)
G1497887 NA non-coding downstream 54984 83379381 ~ 83379586 (-)
G1498033 NA non-coding upstream 2068 83526623 ~ 83527612 (-)
G1498045 NA non-coding upstream 35555 83560110 ~ 83562154 (-)
G1498047 NA non-coding upstream 39357 83563912 ~ 83564196 (-)
G1498068 NA non-coding upstream 72122 83596677 ~ 83596879 (-)
G1498073 irak1bp1 non-coding upstream 79130 83603685 ~ 83603960 (-)
G1496921 NA other downstream 772932 82629246 ~ 82661638 (-)
G1496689 NA other downstream 1188583 82235128 ~ 82245987 (-)
G1496390 NA other downstream 1259718 82172469 ~ 82174852 (-)
G1495552 NA other downstream 2107457 81326685 ~ 81327113 (-)
G1495538 LOC106566048 other downstream 2120255 81311747 ~ 81314315 (-)
G1498077 NA other upstream 80688 83605243 ~ 83605753 (-)
G1498442 NA other upstream 457786 83982341 ~ 83982894 (-)
G1498522 NA other upstream 526455 84051010 ~ 84057392 (-)
G1499671 NA other upstream 1696570 85221125 ~ 85223119 (-)
G1499684 NA other upstream 1762101 85251788 ~ 85288117 (-)

Expression


Co-expression Network