XLOC_003407


Basic Information

Item Value
gene id XLOC_003407
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 20928241 ~ 20930324 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008589
gtattatttgaCAAAATGGACTAgacacattaaaacaaacattcttataaacagattttttcttacaaaataaattatttgtttgtgGAATACGTGTGTTTTGATGAATCTGTGCTTTACAGATTTATACAGTCTTTCACGCTTAAAAAAGACCCTCGTTTTCGCCACCTACTGGCGTAACAGTGTAGTTTACATGATAAACTCCGGTAAAATGAATCATTCAGAGAAAAGATTCGATTCATTGAGATGACTCGCTTCACGTCGCCGATTCGAATGCACGTCAGTCAACTGTCACCAACCGTCTTCTGAAGAAATCATTTATCGCTGCGGCCGGACAGCAAACTGCTCTTTGGCAGGTACATTAAGAAAATGGGCAAAACATGAGTCCTAACGTTAGTGGAATGGAGGGAGGAACCATCGACCTATGACATTATTGTTTCTAAAAAGAACCTACTAAAAAAGAAATTTGAACCTGGGGATGTTGTGGATGTCGTCTATGAGGATAAAAGTTCACCAGCCACAGTTCTAGACATTAAAGAACAAAGAAACTCTCAGGAGGAGGATATTCAGAAGAGGGAAATTTATAGACATAGTACAGAAGAAGTTTCCAAACGTACCAATAAAATTGATCAGAGCAGCAGTAAGGGAAAAAGTAAATGATGAGCACAAGTTACAAgaAAATGGAGTAAACGCAGCCTGTTCATTGGATTCtgg
>TCONS_00008588
gtattatttgaCAAAATGGACTAgacacattaaaacaaacattcttataaacagattttttcttacaaaataaattatttgtttgtgGAATACGTGTGTTTTGATGAATCTGTGCTTTACAGATTTATACAGTCTTTCACGCTTAAAAAAGACCCTCGTTTTCGCCACCTACTGGCGTAACAGTGTAGTTTACATGATAAACTCCGGTAAAATGAATCATTCAGAGAAAAGATTCGATTCATTGAGATGACTCGCTTCACGTCGCCGATTCGAATGCACGTCAGTCAACTGTCACCAACCGTCTTCTGAAGAAATCATTTATCGCTGCGGCCGGACAGCAAACTGCTCTTTGGCAGGTACATTAAGAAAATGGGCAAAACATGAGTCCTAACGTTAGTGGAATGGAGGGAGGAACCATCGACCTATGACATTATTGTTTCTAAAAAGAACCTACTAAAAAAGAAATTTGAACCTGGGGATGTTGTGGATGTCGTCTATGAGGATAAAAGTTCACCAGCCACAGTTCTAGACATTAAAGAGAACAAAGAAACTCTCAGGAGGAGGATATTCAGAAGAGGGAAATTTATAGACATAGTACAGAAGAAGTTTCCAAACGTACCAATAAAATTGATCAGAGCAGCAGTAAGGGAAAAAGTAAATGATGAGCACAAGTTACAAGTAAGgaAAATGGAGTAAACGCAGCCTGTTCATTGGATTCtgg
>TCONS_00008587
gtattatttgaCAAAATGGACTAgacacattaaaacaaacattcttataaacagattttttcttacaaaataaattatttgtttgtgGAATACGTGTGTTTTGATGAATCTGTGCTTTACAGATTTATACAGTCTTTCACGCTTAAAAAAGACCCTCGTTTTCGCCACCTACTGGCGTAACAGTGTAGTTTACATGATAAACTCCGGTAAAATGAATCATTCAGAGAAAAGATTCGATTCATTGAGATGACTCGCTTCACGTCGCCGATTCGAATGCACGTCAGTCAACTGTCACCAACCGTCTTCTGAAGAAATCATTTATCGCTGCGGCCGGACAGCAAACTGCTCTTTGGCAGAAAATGGGCAAAACATGAGTCCTAACGTTAGTGGAATGGAGGGAGGAACCATCGACCTATGACATTATTGTTTCTAAAAAGAACCTACTAAAAAAGAAATTTGAACCTGGGGATGTTGTGGATGTCGTCTATGAGGATAAAAGTTCACCAGCCACAGTTCTAGACATTAAAGAGAACAAAGAAACTCTCAGGAGGAGGATATTCAGAAGAGGGAAATTTATAGACATAGTACAGAAGAAGTTTCCAAACGTACCAATAAAATTGATCAGAGCAGCAGTAAGGGAAAAAGTAAATGATGAGCACAAGTTACAAgaAAATGGAGTAAACGCAGCCTGTTCATTGGATTCtgg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008589 False 714 lncRNA 0.38 5 20928241 20930324
TCONS_00008588 False 721 lncRNA 0.38 5 20928241 20930324
TCONS_00008587 True 706 lncRNA 0.38 5 20928241 20930324

Neighbor

gene id symbol gene type direction distance location
XLOC_003406 CABZ01008730.1 coding upstream 22063 20896122 ~ 20906178 (+)
XLOC_003405 NA coding upstream 37360 20888110 ~ 20890881 (+)
XLOC_003404 cdh4 coding upstream 101488 20371179 ~ 20826753 (+)
XLOC_003403 fezf2 coding upstream 868834 20056732 ~ 20059407 (+)
XLOC_003401 cadpsa coding upstream 888087 19780717 ~ 20040154 (+)
XLOC_003408 zgc:113307 coding downstream 120002 21050326 ~ 21061566 (+)
XLOC_003409 CU459075.1 coding downstream 121904 21052228 ~ 21052344 (+)
XLOC_003410 prelp coding downstream 146548 21076872 ~ 21086254 (+)
XLOC_003411 il19l coding downstream 166015 21096339 ~ 21099783 (+)
XLOC_003412 il10 coding downstream 207624 21137948 ~ 21139503 (+)
XLOC_003369 CR854846.2 misc upstream 4805159 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 8216245 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 8233978 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 8242642 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 8248213 12679732 ~ 12680028 (+)
XLOC_003402 BX276115.1 non-coding upstream 895056 20033066 ~ 20033185 (+)
XLOC_003395 CU207354.2 non-coding upstream 2094995 18832913 ~ 18833246 (+)
XLOC_003394 NA non-coding upstream 2186138 18741027 ~ 18742103 (+)
XLOC_003393 NA non-coding upstream 2220182 18702362 ~ 18708059 (+)
XLOC_003413 BX321912.1 non-coding downstream 255145 21185469 ~ 21186684 (+)
XLOC_003414 NA non-coding downstream 372388 21302712 ~ 21306762 (+)
XLOC_003415 NA non-coding downstream 476363 21406687 ~ 21408834 (+)
XLOC_003417 NA non-coding downstream 682347 21612671 ~ 21759025 (+)

Expression


Co-expression Network