G1498912


Basic Information

Item Value
gene id G1498912
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 84516117 ~ 84567678 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1713556
ttctccctccatcattacatcattatatctctctgtcttcctactccctccattattacatcattacatctctctgtcttcctactccctccatcattacaacatttcatctctctgtcttccttctccctccatcattacatcattatatctctctgtcttcctactccctccattattacatcattacatctctctgtcttcctactgcctccatcattacatctctctgtcttcctactccctccatcattacatctctctgtcttcctactccctccatcattacaacatttcatctctctgtcttcctactccctccatcattacatcattacatctctctgtcttccttctccctccatcattacatcattacatctctctgtcttcctactccctccatcatgacatcgctctgtcttcctcctccctccatcattacatcattacatctctctgtcttcctcctccctccatcattacatctctctgtcttcctactccctccatcattacatctctctgtcttcctcctccctccatcattacatctctctgtcttcgtactccctccatcattacatctctctgtcttcctcctccctccatcattacatctctgtcttcctcctccctccatcattacatctctgtcttcctactccctccatcattacatctctctgtcttcctcctccctccatcattacatctctgtcttcctcctccctccatcattacatcattacatctgtctgtcttcctactccctccatcattaca
>TU1713557
ttctccctccatcattacatcattatatctctctgtcttcctactccctccattattacatcattacatctctctgtcttcctactccctccatcattacaacatttcatctctctgtcttccttctccctccatcattacatcattatatctctctgtcttcctactccctccattattacatcattacatctctctgtcttcctactgcctccatcattacatctctctgtcttcctactccctccatcattacatctctctgtcttcttactccctccatcattacatcattacatctctctgtcttcctcctccctccattattacatctatctgtcttcctcctccctccatcattacatctatctgtcttcctcctccctccatcattacatcattacatctctgtcttcctcctccctccatcattacatctctctgtcttccttctccctccatcattacatctctctgtcttcctcctccctccatcattacatctatctgtcttcctactccctccatcattatatcattacatctctctgtcttcctcctccctccatcattacatctctctgtcttcctcctccctccatcattacatctctctgtcttcctactccctccatcattacatcattacatctctctgtcttccttctccctccatcattacatctctctgtcttcctcctccctccatcattacatcattacatctctctgtcttcctcctccctccatcattacatcattacatctctctgtcttccttctccctccatcattacatctctctgtcttcctcctccctccatcattacatctctctgtcttcctcctccctccatcattacatcattacatctctctttTCCAGTCCACATATGAACTCTCTCAATCACAGTATAAAAACTAGGACTGTTAATGTGTAATGAAGAAGACTGTGGAGGGACAAGGAGTgtgagtgtatgtctgtgtctgtgtgtttgtgtgtctgtgtgtgtatgtgcgtttgtgtatgtgtgtatgtgtgtgtctgtgtgtgtgtgtgattgagacaGCCAGAGAGCACTTGTGTGACTCTCCAACAGTTTCTTGCCTCTCCTGTAAGGCATATGCAGCCTAATTCAAATGACCTAGCAACTAAACAGCCAAATTACATCTGCCTGCCGCCCCCTAACAACCAACAACCCAACATCATTGTCATTATTTTTCAGGCAGGGAGTGCAGAGTAAGAGAAAACAACACTGGTGTCGTTCTGGAGGAAAATATTAAAGATGCTATTCAATCAAACACCAACACCAGGTGGAAGTGGATATAGGACGAAAACAACTGTGAAATGAGCGATTCTCCAAGGAAGTTGTATGTAG
>TU1713559
ttctccctccatcattacatcattatatctctctgtcttcctactccctccattattacatcattacatctctctgtcttcctactccctccatcattacaacatttcatctctctgtcttccttctccctccatcattacatcattatatctctctgtcttcctactccctccattattacatcattacatctctctgtcttcctactgcctccatcattacatctctctgtcttcctactcccttcatcattacatctctctgtcttcctactccctccatcattacatctctctgtcttcctacgccctccatcattacatctctttgtcttcctcctcactccatcattacatctctctgtcttcctcttccctccatcattacatccttacatctctctgtcttcctacgccctccatcattacatctctttgtcttcctactccctccatcattgcaTCTctatgtcttccttctccctccatcattacaccattacagctctctgtcttcctcctcactccatcattacatcat
>TU1713565
ctccatcattgcaTCTctatgtcttccttctccctccatcattacaccattacagctctctgtcttcctcctcactccatcattacatcattatatctctctgtcttccttctccctccatcattacatctctctgtcttcctactccctccatcattacatctctctgtcttcctactccctccattattacatctctctgtcttcctactccctccatcattacatctctctgtcttcctcctccctccatcattacatctctctgtcttcctcctccctccatcattacatctctctgtcttcctactccctctatcattacatctctctgtcttcctcctccctccatcattacatctctctttcttcctactccctccatcattacatctctctgtcttcctcctacctccatcattacatctctatgtcttcctcctccctccatcattacatcatgacatctatctgtcttcctcctccctccatcattacatcattacgtctctctgttttcctcctccctcctccctccatcattacatctctctgtcttcctcctccctccatcattacatctctatgtcttcctcctccctccatcattacatcatgacatctatctgtcttcctcctccctccatcattacattattacatctctctgtcttcctccaacctccatcattacattatacatctctctgtcttcctccccccccatcattacatctctctgtcttcctcctccctccatcattacatcattacatctctctgtcttcctcctccctccatcattacatcattacatctctctgtcttcctcctccctccatcattacat
>TU1713566
tcattacatctctctgtcttccttctccctccatcattacatcattacatctctctgtcttcctactccctccatcattacatccttacatctctctgtcttccttctccctccatcattacaacattacatctctctgtcttccttctccctccatcattacatcattatatccctctgtcttcctcctccctccatcattacatctctctgtcttcctactccctccatcattacatctctctgtcttcctactccctccatcattatatcattacatctctctgtcttcctc
>TU1713564
ccctccatcattacatctctctgtcttcctactccatccatcattacatctctctgtcttcctcctccctccatcattacatctctctgtcttccttctccctccatcattacatcatgacatctctctgtcttcctcctccctccatcattacatctctctttcttcctactccctccatcattacatctctctgtcttcctcctacctccatcattacatctctgtcttcctcctccatccatcatcacatctctctgtcttcctcctccctccatcattacatctatatgtcttcctactccctccatcattacatctctctgtcttcctactccctccatcattatatcattacatcactctgtcttcctcctccctccatcattacatttctctgtcttcctactccctccatcattacatctctctgtcttcctactccctccatcattacatcattacatctctctgtcttcctcttccctccatcattacatctctctgtcttcctcttccctccatcattacatctctctgtcttcctcctccctccatcattacatctctctgtcttcctcctccctccatcattacatctctctgtcttcctactccctccatcattacatctctctgtcttcctactccctccatcattatatcattacatctctctgtcttcctc
>TU1713555
cctcctccctccatcattacatcattacatctctctgtcttcctattccctccatcattacaacattacatctctctgtccatctctcattTCCATAATTACATCTCTCtttcatcattacatcattacatctctctgtcttcctactccctccatcattatatcattacatctctctgtcttcctcctccctccatcattacatcattatatctctctgccttcctactccctccatcattacatcattacatctctctgtcttgttcctccctccatcattacatctctctgtcttcttactccctccatcattacatcattacatctctctgtcttcctcctccctccatcattacatctctctgtcttccttctccctccatcattacatcattacatctctctgtcttcctactccctccatcattacatcattac
>TU1713562
cctcctccctccatcattacatcattacatctctctgtcttcctattccctccatcattacaacattacatctctctgtccatctctcattTCCATAATTACATCTCTCtttcatcattacatcattacatctctctgtcttcctactccctccatcattatatcattacatctctctgtcttcctcctccctccatcattacatcattatatctctctgccttcctactccctccatcattacatctctctgtcttcctagtccctccatcattatatcattacatctctctgtcttcctcctccctccatcattacatctctctgtcttcctcttccctccataatcacatctctctgtcttcctcctccctccatcattacatctctctgtcttcctcctccctccatcattacatcatgacatctatctgtcttcctcctccctccatcattacatcatgacatctctctgtcttcctcctccctccatcatgacatctctctgtcttcctcctccctccatcattatatcattacatctctcttcctactccatcattacatcattacatctctctatcttcctcctccctctatcattACAtaattacatctctctgtcttcctcctacctccatcattacatctctctgtcttcctcctccctccatcattacatctctcgatcttcctactccctcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1713556 False 786 TUCP 0.44 3 84516117 84517180
TU1713557 False 1379 lncRNA 0.43 5 84516117 84567678
TU1713559 False 541 lncRNA 0.43 3 84516117 84535304
TU1713565 False 850 TUCP 0.45 3 84527765 84554229
TU1713566 False 295 lncRNA 0.43 2 84540689 84565607
TU1713564 False 688 TUCP 0.45 3 84544590 84565607
TU1713555 False 441 lncRNA 0.41 3 84545043 84566726
TU1713562 True 705 lncRNA 0.43 2 84545043 84559098

Neighbor

gene id symbol gene type direction distance location
LOC118940500 NA coding upstream 32627 84480749 ~ 84483490 (+)
LOC110493278 LOC106582687 coding upstream 163624 84209507 ~ 84352493 (+)
LOC110494755 LOC106566080 coding upstream 365727 84079553 ~ 84150390 (+)
LOC110494753 LOC106566082 coding upstream 498956 84004256 ~ 84017161 (+)
LOC110494751 LOC106566097 coding upstream 609718 83903921 ~ 83906399 (+)
LOC110494759 LOC106593203 coding downstream 147901 84715579 ~ 84718668 (+)
LOC110494762 p38a coding downstream 164557 84732235 ~ 84765940 (+)
LOC110493283 LOC106566114 coding downstream 221496 84789132 ~ 84793175 (+)
si:dkey-33m11.6 LOC105030694 coding downstream 229510 84797188 ~ 84798988 (+)
ddx19 LOC106566108 coding downstream 272839 84840517 ~ 84848351 (+)
G1498891 NA non-coding upstream 21774 84454093 ~ 84494343 (+)
G1498854 NA non-coding upstream 133516 84381842 ~ 84382601 (+)
G1498845 NA non-coding upstream 146374 84368666 ~ 84369743 (+)
G1498843 NA non-coding upstream 148526 84367347 ~ 84367591 (+)
G1498842 NA non-coding upstream 150058 84365857 ~ 84366059 (+)
G1498967 NA non-coding downstream 51031 84618709 ~ 84619970 (+)
G1498853 NA non-coding downstream 120139 84687817 ~ 84688318 (+)
G1499136 NA non-coding downstream 126831 84694509 ~ 84694733 (+)
G1499137 NA non-coding downstream 128274 84695952 ~ 84696240 (+)
G1499138 NA non-coding downstream 129451 84697129 ~ 84697346 (+)
G1498913 NA other upstream 18719 84495929 ~ 84497398 (+)
G1498583 NA other upstream 341940 84125837 ~ 84174177 (+)
LOC110494749 LOC106566083 other upstream 634929 83879805 ~ 83890067 (+)
G1497918 NA other upstream 881622 83614265 ~ 83634495 (+)
G1496351 LOC106566032 other upstream 2346367 82163138 ~ 82169750 (+)
LOC110493280 LOC106566113 other downstream 109862 84379789 ~ 84685383 (+)
G1499159 NA other downstream 242853 84810531 ~ 84811185 (+)
G1499347 NA other downstream 647115 85214793 ~ 85216073 (+)
LOC110494772 LOC105007909 other downstream 701448 85269122 ~ 85288116 (+)

Expression


Co-expression Network