G1499482 (LOC106566108)


Basic Information

Item Value
gene id G1499482
gene name LOC106566108
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 84844442 ~ 84845629 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1714280
GAAGATCATGGCCTGAGCGATGGTGATGGCTCCGTAGATGTTGCAGAGGGCCGCGAACTTCTCCTCTTTGCTGTCACAGAGGACGTAGTACTGCTTGATGGTGTCCAGCGTCTCCTCCTCCCGTTTCAGCTTGATGATGTTGGGGTCTGGGACGATGCGCTGGGCAAAGTTCCACACCGTCTCCTCAAAGGTGGCAGAGAACAGCAGCATCTGGCACTGTTTGGGTAGCATCCTGAGAGGCAGAAAAGGGGGTCATTGTGGTGGGTGGGTTTTTAGAACTGTTAGCCAACTTCctgaaacatagagagagagagaagactaagGGGTCAATGTGTGTACCTCTGAATGCGTATACTCTGGTCCTGATGACCCTGTGTAGCGATCATGACGTCAGCTTCGTCCAGGACAAACACTTTGATCTTCTTGGGGTCGATGAACTTGAACTTCAGACACCAGTCCAGCATGGTGCCTGGCGTCCCTATCACAACCTGCTCCTGGAGCTGGGTACCTCTCTGCAGTTTGTTTCCTCTGATGGCGTAGACTAGTTTGACCTCTGAGTAATGCTTCCCCATCTGCTCAATGACCTTTCCTGTCTGCAGGGCCAGCTCATAGgtaggagacacacagagagcctgggagaggagagaggaaggtgtTATATAGCTCATAGgtaggagacacacagagagcctaggagaggagagaggaaggtgtTATATAGCTCATAGGTAGGAGAGACAgagcctgggagaggagagagagaggaaggtattATATAGCTCATAGGTAGGAGAGACAgagcctgggagaggagagagagagaggaaggtgttaTATAGCTCATAGGTAGGAGAGACAGAGCCTgggagaggagcgag

Function

NR:

description
ATP-dependent RNA helicase DDX19A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1714280 True 878 lncRNA 0.52 3 84844442 84845629

Neighbor

gene id symbol gene type direction distance location
LOC110494760 ca119 coding downstream 113713 84724945 ~ 84730729 (-)
LOC110493281 LOC106593201 coding downstream 131045 84690785 ~ 84713397 (-)
LOC110494754 LOC106566081 coding downstream 797904 84032365 ~ 84046538 (-)
ccdc66 LOC106566088 coding downstream 992385 83837851 ~ 83860046 (-)
si:dkey-261l7.2 LOC106566092 coding downstream 1215378 83608842 ~ 83629064 (-)
slc32a1 LOC106566112 coding upstream 36359 84881988 ~ 84887491 (-)
LOC110494769 LOC106566115 coding upstream 104891 84950520 ~ 84995003 (-)
LOC118940503 NA coding upstream 345168 85190797 ~ 85204675 (-)
shmt2 shmt2 coding upstream 454677 85300306 ~ 85342666 (-)
LOC110487407 NA coding upstream 470716 85316345 ~ 85318853 (-)
G1499487 NA non-coding downstream 73802 84770334 ~ 84770640 (-)
G1499472 NA non-coding downstream 89295 84754782 ~ 84755147 (-)
G1499470 LOC106572737 non-coding downstream 90184 84752084 ~ 84754258 (-)
G1499457 NA non-coding downstream 112758 84731319 ~ 84731684 (-)
G1499456 NA non-coding downstream 115528 84727520 ~ 84728914 (-)
G1499517 NA non-coding upstream 25508 84871137 ~ 84871358 (-)
G1499518 NA non-coding upstream 33089 84878718 ~ 84879253 (-)
G1499523 NA non-coding upstream 34061 84879690 ~ 84879956 (-)
G1499550 NA non-coding upstream 111856 84957485 ~ 84957874 (-)
G1499566 NA non-coding upstream 144819 84990448 ~ 84992243 (-)
G1498522 NA other downstream 787050 84051010 ~ 84057392 (-)
G1498442 NA other downstream 861548 83982341 ~ 83982894 (-)
G1498077 NA other downstream 1238689 83605243 ~ 83605753 (-)
G1496921 NA other downstream 2182804 82629246 ~ 82661638 (-)
G1496689 NA other downstream 2598455 82235128 ~ 82245987 (-)
G1499671 NA other upstream 375496 85221125 ~ 85223119 (-)
G1499684 NA other upstream 441027 85251788 ~ 85288117 (-)
LOC110494779 ddit3 other upstream 1394089 86236554 ~ 86242991 (-)
G1500834 LOC106566150 other upstream 1604050 86449679 ~ 86450734 (-)
LOC110493290 map3k12 other upstream 1952436 86798065 ~ 86880836 (-)

Expression


Co-expression Network