G1499576


Basic Information

Item Value
gene id G1499576
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 85011336 ~ 85033259 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1714398
ataaagagacaccacaacactacataaagagagacaacactacataaagagagacaccacaacactacataaagagagaccccacaacactacataaagagagaccccacaacactacataaagagacaccacaacactacataaagagagacaacactacacaaagagagacactacaacactacataaagagagacaccacaacactacataaagagagacaccacaacactacataaagagagaccccacaacactacataaagagacaccacaacactacataaagagagacaacactacataaagagagacaccacaacactacataaagagagacaacactacataaagagagacaacacaacactacataaagagagacaacactacataaagagagacaccacaacactacacaaagagagacaacacaacactacataaagagagacactacaacactacatgaagagagacaccacaacactacataaagagagacaccacaacactacataaagagagactcaacaacactacataaagagagacaacacaacactacataaagagagacaccacaacattgttgtatgtggaggatgagggctgcagtagatatctcagataaagGGGGgaatgaggcctaagagggttttataacattttttaaaaaagcaTCAACTAGTGGGTCTTGCgtcaggtatacagagatgaccagattacagaggagtatagagt
>TU1714399
acactacataaagagagacaacactacataaagagagacaccacaacactacataaagagagacaccacaacactacataaagagagacaccacaacactacataaatagagactccacaacactacataaagagagacaccacaacactacataaagagagacactacaacactacataaagagagacaccacaacactacataaagagagacaccacaacactacataaagagagacactacaacactacataaagagagacaacactacataaagagagacaacacaacactacataaagagagaccccacaacactacataaagagacaccac
>TU1714397
GGTTGGTATCTAGGAGATCCAGGGGAGGTTGGTATCCAGGAGAACCAGGGGAGGTTGGTATCTAGGAGATCCAGGGGAGGTTGGTATCTAGGAGATCCAGGGGAGGTTGGTATCTAGGAGATCCAGGGGAGGTTGGTATCTAGGAGATCCAGGGGAGGTTGGTATCCAGGAGAACCAGGGGAGGTTGGTATCTAGGAGATCCAGGGGAGGTTGGTATCTAGGAGAAACAGGGGAGGTTGGTATCTAGGAAATCCAGGGGAGGTTGGTATCTAGGATGTAATACAATATGactaggcaagccagttaagaacaaatacttatttacaatgacgcctacCAAGGGGCAagaggcctcctgcagggacgggagctgggattaaaaatacaaatgtaggacaaaacacacaacactacataaagagagacaccacaacactacataaagagagacaccacaacactacataaagagagacaccacaacactacataaagagagacaccacaactctacataaagagagacactacaacactacataaagagagacactacaacactacataaagagagacactacaacactacataaagagagacaccacaacactacataaagagagacactacaacactacataaagagagacactacaacactacataaagagagacaacactacataaagagagacaccacaacactacataaagagagacaacacaacactacataaagagagaccccacaacactacataaagagacaccacaacactacataaagagagacaacactacataaagagacaccacaacactacataaagagagacaccacaacactacataaagagagacaacacaacactacataaagagagaccccacaacactacataaagagacaccacaacactacataaagagagacaacactacactacataaagagagactccacaacactacataaagagagacaacactacataaagagagacaccacaacactacataaagagagacaacactacataaagagagacaccacaacactacataaagagagacaacacaacactacataaagagagaccccacaacactacataaagagacaccacaacactacataaagagagacaacactacataaagagagacaacactacataaagagagacaacacaacactacataaagagagacactacaacactacatgaagagagactccacaacactacataaagagagacactacaacactacataaagagagacaacactacataaagagagacaccacaacactacataaagagagacaaca

Function

NR:

description
hypothetical protein EH28_05749

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1714398 False 745 lncRNA 0.39 3 85011336 85016058
TU1714399 False 337 lncRNA 0.39 2 85025589 85030860
TU1714397 True 1337 lncRNA 0.42 3 85027277 85033259

Neighbor

gene id symbol gene type direction distance location
LOC110494769 LOC106566115 coding downstream 16333 84950520 ~ 84995003 (-)
slc32a1 LOC106566112 coding downstream 123845 84881988 ~ 84887491 (-)
LOC110494760 ca119 coding downstream 280607 84724945 ~ 84730729 (-)
LOC110493281 LOC106593201 coding downstream 297939 84690785 ~ 84713397 (-)
LOC110494754 LOC106566081 coding downstream 964798 84032365 ~ 84046538 (-)
LOC118940503 NA coding upstream 157538 85190797 ~ 85204675 (-)
shmt2 shmt2 coding upstream 267047 85300306 ~ 85342666 (-)
LOC110487407 NA coding upstream 283086 85316345 ~ 85318853 (-)
LOC118940505 NA coding upstream 291894 85325153 ~ 85326712 (-)
LOC110494775 LOC106566119 coding upstream 311262 85344521 ~ 85425394 (-)
G1499566 NA non-coding downstream 19093 84990448 ~ 84992243 (-)
G1499550 NA non-coding downstream 53462 84957485 ~ 84957874 (-)
G1499523 NA non-coding downstream 131380 84879690 ~ 84879956 (-)
G1499518 NA non-coding downstream 132083 84878718 ~ 84879253 (-)
G1499517 NA non-coding downstream 139978 84871137 ~ 84871358 (-)
G1499646 NA non-coding upstream 113628 85146887 ~ 85147762 (-)
G1499661 NA non-coding upstream 135915 85169174 ~ 85169732 (-)
G1499681 NA non-coding upstream 183341 85216600 ~ 85217234 (-)
G1499682 NA non-coding upstream 184050 85217309 ~ 85217771 (-)
G1499672 NA non-coding upstream 190326 85223585 ~ 85224065 (-)
G1498522 NA other downstream 953944 84051010 ~ 84057392 (-)
G1498442 NA other downstream 1028442 83982341 ~ 83982894 (-)
G1498077 NA other downstream 1405583 83605243 ~ 83605753 (-)
G1496921 NA other downstream 2349698 82629246 ~ 82661638 (-)
G1496689 NA other downstream 2765349 82235128 ~ 82245987 (-)
G1499671 NA other upstream 187866 85221125 ~ 85223119 (-)
G1499684 NA other upstream 253397 85251788 ~ 85288117 (-)
LOC110494779 ddit3 other upstream 1206459 86236554 ~ 86242991 (-)
G1500834 LOC106566150 other upstream 1416420 86449679 ~ 86450734 (-)
LOC110493290 map3k12 other upstream 1764806 86798065 ~ 86880836 (-)

Expression


Co-expression Network