G1500122


Basic Information

Item Value
gene id G1500122
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 86118587 ~ 86119538 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1715087
ACTTCGCAATAACTTTATTGTAGACAGTTAATAGACAGTGGCACAATGATGAAACAGCTTGTAGTTGCCGTTGTGTTTGGCGGAGGCGAGCTGGGCTGTAGTTgctactacactacaacaggaGATAAggaaacatactgtacattatccaTATGGGCTTTTCCTCCCGTTCCCGGGTCTTTCTCCGTGCCGTGGGATGAGGTGAGTTAAGCTGGTGTTGATACCAGGGGGTGTAATGCAGTTTACCCACCTATGTTTTTACCACTAGTTGATACTACAGGGAGTAAGTAAGAAGAATACGAGGTGAAGCTGGTGTCCCTTTCACAGCATGTCTGGTTCTGCCGGTTCTGGTCTCTGTGTTTGGCTCAGGCTGGGTTTGGGTGTTGGAGGATACAGTACCAGAGGGGTTGGGTCCAAAGATGGTTCAGGTCACTGAGTTGGGTTCAGGCTGGTTGGGATGGGGCTGGATGGGCTCTAGACTGGGTCCTTGGGGCTGGGTGGGTTCTAGGTTTGGTGTTCTGTGCTGACTGGGTCCTTGGGGCTGGGTGAGTTCTAGGTTCGGTGTTCTGTGCTGACTGGGTCCTTGGGGCTGGGTGGGTTCTAGGTTCGGTGTTCTGTGCTGACTGGGTCCTTGGGGCTGGGTGTGTTCTAGGTTCCGTGTTCTGTGCTGACTGGGTCCTTGGGGCTGGGTGGGTTCTAGGTTCGGTTTCCTGGGCTGAATGGATGTCAGAGGGATGTAAAGTTGCTGGGTCTGAAGATACGGTCAAACTCATTGAGAATGATCTCCACGGCCTGGTTCTGGTAGACCATGTTGATGGCCATGTTAACATTGTCCCTCTCCGGGCGCATCAGGGTGGGACCGAACACTATGCCGATGTTCTGGGTCGACATCCGGTTAGAGTCA
>TU1715089
ACTTCGCAATAACTTTATTGTAGACAGTTAATAGACAGTGGCACAATGATGAAACAGCTTGTAGTTGCCGTTGTGTTTGGCGGAGGCGAGCTGGGCTGTAGTTgctactacactacaacaggaGATAAggaaacatactgtacattatccaTATGGGCTTTTCCTCCCGTTCCCGGGTCTTTCTCCGTGCCGTGGGATGAGGTGAGTTAAGCTGGTGTTGATACCAGGGGGTGTAATGCAGTTTACCCACCTATGTTTTTACCACTAGTTGATACTACAGGGAGTAAGTAAGAAGAATACGAGGTGAAGCTGGTGTCCCTTTCACAGCATGTCTGGTTCTGCCGGTTCTGGTCTCTGTGTTTGGCTCAGGCTGGGTTTGGGTGTTGGAGGATACAGTACCAGAGGGGTTGGGTCCAAAGATGGTTCAGGTCACTGAGTTGGGTTCAGGCTGGTTGGGATGGGGCTGGATGGGCTCTAGACTGGGTCCTTGGGGCTGGGTGGGTTCTAGGTTTGGTGTTCTGTGCTGACTGGGTCCTTGGGGCTGGGTGAGTTCTAGGTTCGGTGTTCTGTGCTGACTGGGTCCTTGGGGCTGGGTGGGTTCTAGGTTCGGTGTTCTGTGCTGACTGGGTCCTTGGGGCTGGGTGTGTTCTAGGTTCGGTTTCCTGGGCTGAATGGATGTCAGAGGGATGTAAAGTTGCTGGGTCTGAAGATACGGTCAAACTCATTGAGAATGATCTCCACGGCCTGGTTCTGGTAGACCATGTTGATGGCCATGTTAACATTGTCCCTCTCCGGGCGCATCAGGGTGGGACCGAACACTATGCCGATGTTCTGGGTCGACATCCGGTTAGAGTCA
>TU1715090
ACTTCGCAATAACTTTATTGTAGACAGTTAATAGACAGTGGCACAATGATGAAACAGCTTGTAGTTGCCGTTGTGTTTGGCGGAGGCGAGCTGGGCTGTAGTTgctactacactacaacaggaGATAAggaaacatactgtacattatccaTATGGGCTTTTCCTCCCGTTCCCGGGTCTTTCTCCGTGCCGTGGGATGAGGTGAGTTAAGCTGGTGTTGATACCAGGGGGTGTAATGCAGTTTACCCACCTATGTTTTTACCACTAGTTGATACTACAGGGAGTAAGTAAGAAGAATACGAGGTGAAGCTGGTGTCCCTTTCACAGCATGTCTGGTTCTGCCGGTTCTGGTCTCTGTGTTTGGCTCAGGCTGGGTTTGGGTGTTGGAGGATACAGTACCAGAGGGGTTGGGTCCAAAGATGGTTCAGGTCACTGAGTTGGGTTCAGGCTGGTTGGGATGGGGCTGGATGGGCTCTAGACTGGGTCCTTGGGGCTGGGTGGGTTCTAGGTTCGGTGTTCTGTGCTGACTGGGTCCTTGGGGCTGGGTGGGTTCTAGGTTCGGTTTCCTGGGCTGAATGGATGTCAGAGGGATGTAAAGTTGCTGGGTCTGAAGATACGGTCAAACTCATTGAGAATGATCTCCACGGCCTGGTTCTGGTAGACCATGTTGATGGCCATGTTAACATTGTCCCTCTCCGGGCGCATCAGGGTGGGACCGAACACTATGCCGATGTTCTGGGTCGACATCCGGTTAGAGTCA

Function

NR:

description
rho GTPase-activating protein 15-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1715087 False 904 lncRNA 0.52 2 86118587 86119538
TU1715089 False 856 lncRNA 0.52 3 86118587 86119538
TU1715090 True 760 lncRNA 0.51 3 86118587 86119538

Neighbor

gene id symbol gene type direction distance location
LOC118936559 LOC106566131 coding upstream 12650 86102351 ~ 86105937 (+)
LOC110494777 LOC106566131 coding upstream 16276 86092647 ~ 86102311 (+)
LOC110493285 LOC106566129 coding upstream 109146 85849052 ~ 86009441 (+)
LOC110493284 LOC106566126 coding upstream 296849 85730542 ~ 85824609 (+)
mars1 mars coding downstream 64195 86183733 ~ 86238354 (+)
LOC118940507 kif5a coding downstream 156852 86276390 ~ 86452362 (+)
soat2 LOC106566146 coding downstream 347588 86467126 ~ 86511354 (+)
tarbp2 tarbp2 coding downstream 537140 86656678 ~ 86673359 (+)
sp1 sp1 coding downstream 580000 86699538 ~ 86711214 (+)
G1500117 NA non-coding upstream 3181 86113789 ~ 86115406 (+)
G1500103 NA non-coding upstream 42454 86075083 ~ 86076133 (+)
G1500087 NA non-coding upstream 83738 86030900 ~ 86034849 (+)
G1500086 NA non-coding upstream 87793 86030540 ~ 86030794 (+)
G1500024 NA non-coding upstream 239596 85878642 ~ 85878991 (+)
G1500123 NA non-coding downstream 13971 86133509 ~ 86135124 (+)
G1500125 NA non-coding downstream 19150 86138688 ~ 86140344 (+)
G1500159 NA non-coding downstream 66847 86186385 ~ 86186778 (+)
G1500184 NA non-coding downstream 90875 86210413 ~ 86210904 (+)
G1500185 NA non-coding downstream 99820 86219358 ~ 86220198 (+)
G1499923 LOC106566127 other upstream 406728 85625443 ~ 85711859 (+)
G1499374 NA other upstream 825466 85291785 ~ 85293121 (+)
LOC110494772 LOC105007909 other upstream 830471 85269122 ~ 85288116 (+)
G1499347 NA other upstream 902514 85214793 ~ 85216073 (+)
G1499159 NA other upstream 1307402 84810531 ~ 84811185 (+)
G1500198 NA other downstream 147790 86267328 ~ 86268175 (+)
G1500239 NA other downstream 262760 86382298 ~ 86383545 (+)
G1500170 LOC106566147 other downstream 401292 86520830 ~ 86527030 (+)
G1501148 NA other downstream 1049001 87168539 ~ 87169007 (+)
LOC110494789 bloc1s1 other downstream 1304972 87415720 ~ 87486890 (+)

Expression


Co-expression Network