G1500125


Basic Information

Item Value
gene id G1500125
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 86138688 ~ 86140344 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1715097
CAAAGGGTTGTTCGAGATTTATGTTATTCTCTAATAAaagaccccaaagcaaatcagggggaggaaAATAGGTTTCTTCGAAGAGGACAAATCATGCAGGGAGTTAGATGGTCATTCTTCCCTTCAGCGATGCtctctcagtgattctctctcagTGATGCTCTCTCAGTGATGCTCTCTCAGTGATTCACTCCTGTGTTTCTCTCCAGTcattctctccacagaacaaagggacAGCGTGTCGTTTTATAACCCAGCCcttagcctgtggttgaccaattagaattccttgcaataaaactaGCCAATGgacaaataacaagtatcctatttcagaATGTCTGAACCATTAATCAATCATTCCCTTTTACAGAAAAAAACACTATTACCTATATTACCTATTATTATTAATCGTTACTCTATTGACTTCTCGTCCTTTTAACCTCTCGTCCTCTGTCTCTGCGTTGTGTTTTTATCTGCTACATATTCTCACAGGGTTACCCTTTGGGAACAgcccaaaaaaacaaacattttaggtTCAGATAGGACCTTTTTCTACAAGAGTGTTTAAGCTAACTGAGAAATATACAGTAGCTAGATCTGTCttacactccctctctcacacacccacacaagaaGAAAAACTGAACTTACAGCCACTCTGTTCATCAGTAGCCTTTATATCACCCGTATCAGAGTCCAGATCAAAGCTAAACTATTAAAACGGATGTTTCCTTGGTAGTCGATAGGAGAGTCAGTCCACGCCACTGTCCACTGTAGTGCAccttcctgacacacacacacaccttttcatcTGAGGAACCACAACCCCAAATCCACttgtgtctctccttctctctcgcagCATAAACTTCCTCTTTCTATATGCAACCTTACGCTAACACTATCAGCATGTACCATCACTCTCACTTGGCACAAACAGGAAGCCATGTGAAGGAAGCCCTGTGAAGGAAGGCATGTGAAGGAAGCCCTGTGAAGGAAGCCATGTGAAGGAAGCCATGTGAAGGAAGCCATGTGAAGGAAGCCATGTGAAGGAAGCCATGTGAAGGAAGCAATgttagagcactatatagggaataggggggcatagggctctggtctaaagtagtgcactatatagggaatatggtctaaagtagtgcactatgtagggaatagggtctaaagtagtgcactatgtagagaatagggtctaaagtagtgcactatgtagggaatagggtctaaagtagtgcactatatagggaacgggGAGCTGTTTGGGACGTACCCAGAGATATTATCATATCAACAATATAACAGCACTAACAGTAACAACAAGGACAACAGTAATCATTATCTACAGACTCTTATCATCTTATTTTCGTAATTACGATGGTGACACTAGCACTATAGGTCAGTCGGGGTGGAAGTTGCATGAAGCCCAGACACAATCTCTACTTTTACAACACTGTGTGGTTATTCCTGTAAGTGTTGTAATTGCTCGTTGTTACACTGTACGACCCACAGTTCCTATTCGCCTGGCACAATGTAGAATGGACAGGCGTTACGGGGTATGAATTTAGCTCCAGCTTGCCCTCTGATAAAGTAGGTAGAATGTGAACTATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1715097 True 1629 lncRNA 0.42 2 86138688 86140344

Neighbor

gene id symbol gene type direction distance location
LOC118936559 LOC106566131 coding upstream 32751 86102351 ~ 86105937 (+)
LOC110494777 LOC106566131 coding upstream 36377 86092647 ~ 86102311 (+)
LOC110493285 LOC106566129 coding upstream 129247 85849052 ~ 86009441 (+)
LOC110493284 LOC106566126 coding upstream 316950 85730542 ~ 85824609 (+)
mars1 mars coding downstream 43389 86183733 ~ 86238354 (+)
LOC118940507 kif5a coding downstream 136046 86276390 ~ 86452362 (+)
soat2 LOC106566146 coding downstream 326782 86467126 ~ 86511354 (+)
tarbp2 tarbp2 coding downstream 516334 86656678 ~ 86673359 (+)
sp1 sp1 coding downstream 559194 86699538 ~ 86711214 (+)
G1500123 NA non-coding upstream 3564 86133509 ~ 86135124 (+)
G1500122 NA non-coding upstream 19150 86118587 ~ 86119538 (+)
G1500117 NA non-coding upstream 23282 86113789 ~ 86115406 (+)
G1500103 NA non-coding upstream 62555 86075083 ~ 86076133 (+)
G1500087 NA non-coding upstream 103839 86030900 ~ 86034849 (+)
G1500159 NA non-coding downstream 46041 86186385 ~ 86186778 (+)
G1500184 NA non-coding downstream 70069 86210413 ~ 86210904 (+)
G1500185 NA non-coding downstream 79014 86219358 ~ 86220198 (+)
G1500186 NA non-coding downstream 81824 86222168 ~ 86223815 (+)
G1500187 NA non-coding downstream 93309 86233653 ~ 86234108 (+)
G1499923 LOC106566127 other upstream 426829 85625443 ~ 85711859 (+)
G1499374 NA other upstream 845567 85291785 ~ 85293121 (+)
LOC110494772 LOC105007909 other upstream 850572 85269122 ~ 85288116 (+)
G1499347 NA other upstream 922615 85214793 ~ 85216073 (+)
G1499159 NA other upstream 1327503 84810531 ~ 84811185 (+)
G1500198 NA other downstream 126984 86267328 ~ 86268175 (+)
G1500239 NA other downstream 241954 86382298 ~ 86383545 (+)
G1500170 LOC106566147 other downstream 380486 86520830 ~ 86527030 (+)
G1501148 NA other downstream 1028195 87168539 ~ 87169007 (+)
LOC110494789 bloc1s1 other downstream 1284166 87415720 ~ 87486890 (+)

Expression


Co-expression Network