G1500824


Basic Information

Item Value
gene id G1500824
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 86428896 ~ 86429722 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1715958
tggtgtcccaggtctaaatcaggccctgattagaggggaatcacccacctggtgtcccaggtctaaatcaggccccgattagaggggaatcacccacctggtgtcccaggtctaaatcagtccccgattagaggggaatcacccacctggtgtcccaggtctaaatccggccctgattagaggggaatcacccacctggtgtcccaggtctaaatcaggccctgattagaggggaatcac
>TU1715957
tggtgtcccaggtctaaatcaggccctgattagaggggaatcacccacctggtgtcccaggtctaaatcaggccccgattagaggggaatcacccacctggtgtcccaggtctaaatcagtccccgattagaggggaatcacccacctggtgtcccaggtctaaatccggccctgattagaggggaatcacccacctggtgtcccaggtctaaatcaggccctgattagaggggaatcacccacctggtgtcccaggtctaaatcag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1715958 False 240 lncRNA 0.55 2 86428896 86429722
TU1715957 True 267 lncRNA 0.55 2 86429016 86429722

Neighbor

gene id symbol gene type direction distance location
dctn2 LOC106566142 coding downstream 152837 86249232 ~ 86276059 (-)
LOC110494779 ddit3 coding downstream 185905 86236554 ~ 86242991 (-)
LOC110493286 LOC106566136 coding downstream 245291 86118575 ~ 86183605 (-)
LOC110494776 LOC106566127 coding downstream 715766 85710201 ~ 85713130 (-)
LOC110494775 LOC106566119 coding downstream 1003502 85344521 ~ 85425394 (-)
igsf8 igsf8 coding upstream 111077 86540799 ~ 86555989 (-)
sp7 sp7 coding upstream 176218 86605940 ~ 86610581 (-)
tespa1 LOC106566176 coding upstream 243730 86673452 ~ 86697487 (-)
LOC110495202 LOC106566175 coding upstream 281731 86711453 ~ 86714926 (-)
LOC110494797 LOC106596199 coding upstream 310826 86740548 ~ 86774465 (-)
G1500823 NA non-coding downstream 288 86428388 ~ 86428608 (-)
G1500822 NA non-coding downstream 831 86427835 ~ 86428065 (-)
G1500821 NA non-coding downstream 1170 86427458 ~ 86427726 (-)
G1500819 LOC102795712 non-coding downstream 6471 86422038 ~ 86422425 (-)
G1500818 NA non-coding downstream 7350 86421343 ~ 86421546 (-)
G1500829 NA non-coding upstream 5903 86435625 ~ 86437461 (-)
G1500830 NA non-coding upstream 12825 86442547 ~ 86445367 (-)
G1500832 NA non-coding upstream 16111 86445833 ~ 86446211 (-)
G1500833 LOC106566150 non-coding upstream 19519 86449241 ~ 86449485 (-)
G1500835 NA non-coding upstream 21364 86451086 ~ 86451624 (-)
G1499684 NA other downstream 1140779 85251788 ~ 85288117 (-)
G1499671 NA other downstream 1205777 85221125 ~ 85223119 (-)
G1498522 NA other downstream 2371504 84051010 ~ 84057392 (-)
G1498442 NA other downstream 2446002 83982341 ~ 83982894 (-)
G1500834 LOC106566150 other upstream 19957 86449679 ~ 86450734 (-)
LOC110493290 map3k12 other upstream 368343 86798065 ~ 86880836 (-)
G1501650 LOC106566166 other upstream 704336 87134058 ~ 87166800 (-)
G1501745 NA other upstream 965058 87394780 ~ 87395835 (-)
dnsl3 dnsl3 other upstream 1732556 88162116 ~ 88175346 (-)

Expression


Co-expression Network