G1500168


Basic Information

Item Value
gene id G1500168
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 86460154 ~ 86464207 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1715154
tttgccttgatggcagctttaaacactcttggcattctctcaatcaacttcacctggaattttttagtcagtttagaacaaattcttattttcaatgacggcctaggaacagtgggttaactgccttgttcaggggcaaaacgacagctcagggGTTTGaactccaacgctctaaccattaggctaccctgccgaatgcttttccaaaagtcttaaaggagttcccacatatgctgagcacttgttgtctgcttttccttcactctgtggtccaactcttcccaaaccatctcaattgggttgaggtcggttgattgtggaggccaggtcatctgatgcagcactccatcactctccttcttggtcaaatagcccatacacagcctggaggtgtgttgggtcattgtcctgttgaaaaacaaatgatagtcaaaTTAAGCAcagaccagatgggatggcgtatcgctgcagaatgctgtggtagccatgctagttaagtgcgccttgaattctaaataaatcactgacagtgtcaccagcaaatcacccccacatcatatcacctcctcctccttgcttcacggtgggaaataaacatgcagagatcatccgttcacccacaccacttcctcctccatgcttcacggtgggaaataaacatgcagagatcatccgttcacccacaccacttcctcctccatgcttcacagtgggaaataaacatgcagagatcatctgttcacccacaccgcatctaacaaagacacggcggttgggggaaaagaaaaaaaaattggactcatcagaccaaaggacagatttccaccggtctattgctcatgtttcttggcccaagcaagtctcttcttattattggtgtcctttagtagaggattctttgcagcaatttgaccatgaaggcctgattcacgcagtttcctcagaacagttgatgttgagatttgtgAAGCAAATTGCTGAGGCtggaaactctaatgaacttatcctctgcagcagaggtaactctgggtcttccattcctgtggcggtcctcatgagagcaggtttcatcatagcgcttgatgttttttgtgtctgcacttgaagaaacttttaaagttcttgaaatgttcctccGCATTGACTTCATGTCTTGAAGCAAtgacggactgtcatttctctttgcttatttgagctgttaatatggactcggtcttttaccaaatagggctatcttctgtatacacccCCTACCTTCTAacaacacatctgattggctcaaaggcattaagatggaaataaattccactatttaacttttaacaaggcacacctgttaattgaaatgcattccaagtgactacctcatgaaactggttga

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1715154 True 1381 lncRNA 0.44 2 86460154 86464207

Neighbor

gene id symbol gene type direction distance location
LOC118940507 kif5a coding upstream 7792 86276390 ~ 86452362 (+)
mars1 mars coding upstream 221800 86183733 ~ 86238354 (+)
LOC118936559 LOC106566131 coding upstream 354217 86102351 ~ 86105937 (+)
LOC110494777 LOC106566131 coding upstream 357843 86092647 ~ 86102311 (+)
LOC110493285 LOC106566129 coding upstream 450713 85849052 ~ 86009441 (+)
soat2 LOC106566146 coding downstream 2919 86467126 ~ 86511354 (+)
tarbp2 tarbp2 coding downstream 192471 86656678 ~ 86673359 (+)
sp1 sp1 coding downstream 235331 86699538 ~ 86711214 (+)
LOC110494798 amhr2 coding downstream 250894 86715101 ~ 86734187 (+)
prr13 NA coding downstream 314837 86779044 ~ 86781359 (+)
G1500172 NA non-coding upstream 289 86458377 ~ 86459865 (+)
G1500176 NA non-coding upstream 3941 86453100 ~ 86456213 (+)
G1500259 NA non-coding upstream 26079 86433703 ~ 86434075 (+)
G1500258 NA non-coding upstream 27422 86432489 ~ 86432732 (+)
G1500254 NA non-coding upstream 34897 86424966 ~ 86425257 (+)
G1500167 NA non-coding downstream 196 86464403 ~ 86465937 (+)
G1500267 NA non-coding downstream 2394 86466601 ~ 86466938 (+)
G1500270 NA non-coding downstream 45408 86509615 ~ 86510645 (+)
G1500171 LOC106566147 non-coding downstream 50559 86514766 ~ 86519779 (+)
G1500169 NA non-coding downstream 67059 86531266 ~ 86535084 (+)
G1500239 NA other upstream 76609 86382298 ~ 86383545 (+)
G1500198 NA other upstream 191979 86267328 ~ 86268175 (+)
G1499923 LOC106566127 other upstream 748295 85625443 ~ 85711859 (+)
G1499374 NA other upstream 1167033 85291785 ~ 85293121 (+)
LOC110494772 LOC105007909 other upstream 1172038 85269122 ~ 85288116 (+)
G1500170 LOC106566147 other downstream 56623 86520830 ~ 86527030 (+)
G1501148 NA other downstream 704332 87168539 ~ 87169007 (+)
LOC110494789 bloc1s1 other downstream 960303 87415720 ~ 87486890 (+)
LOC110494816 LOC106566192 other downstream 1625450 88089634 ~ 88143474 (+)
G1502352 NA other downstream 2305663 88769870 ~ 88800640 (+)

Expression


Co-expression Network