G1500167


Basic Information

Item Value
gene id G1500167
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 86464403 ~ 86465937 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1715153
aaaaacctTTGAAtaagtagctgtgtccaaacttttgactggtattgtatgtttgtttcatcacaaaaactggagagcaacatctgtcctgtgaagtccacaaagcaaatattgcatgtaacaaacagttacatgacctggAACATGGTCCAACAAGTTAATGTTTTCGATAGTTTTACTgaacaactactgatttagaaccactgagttaccgcaagtcagcaCAAAGATGACGAGAGTATTGACACTGCTGTtacagcaccatttcaacttaaacatTCACATCAAATCAACAAGGCTATATATGTTTAGTTTGAActccaatgccatcctcctctcttacaTGTTGGCAAAACAGTCAatggctctgtcatacagtactcTTTACGTTGTTGTTTTCATAGGCTAGCAAGCATTCTAGCTAGGTAGCCTAACTTCCTCGCATGGGCAACAATGAGCCAGcttagttagctagttaactagtTAGTTAATGTGAGCCTTCTAGGCTACATCTTGAACTTCAATTGCCTCAGGCCAGTGGTACAATATATTAATTCACGCCATCATAATCATTGGCCTGTAGagagaattaagtcaaaaccacaagtccaaatccccatctccatccatggccTAGGAAAGGGatgatttagcaagctagctacagcAGGACATCAAGTTGGCCAGAAACGAAAAATACTTTTTTCTTAGGATGTgatttgattggtgtgaagccaaatccaaagtGACCTCATTTgtggagcgggggggggggggggggggggggggggggggggggggggggggggttgctgcaCCAGGACATCCCCACAGTTGAGCTCAGcttaatgctgattggctaattatttcatttatttgtatttatcaaGGAAGGCCATTATGCTTGCTGGCATCAATCAGTCAAATGCTATGGCCGCCACACTTCTTACTGTTTTGTCCCAGACAGCGTCAGATACATGGACTACACAGAATGGCGCTGTTCCACTCGCTCAGAGATTCAGCCACTAGCCAATTGACAAAAAAtgatgaaaacacagagagagacaaaagatacGTTTAAATGTTTCTATTGGTCAAATATTTGGGGAAGCTTCCTTTGGTATCCATGACTACACATAGATGGTGGCTGGGATCTCTGCACTATAGGTCTAGACATgtgggatgatgatgatgttgatgatgttgaggatgatgacgatgatgatgatgaagatgatgatgttgtgctagtctgtctctgtctgtctgttgtctgaTTTGTAACCAATCCGAAGATGTTCTAGTCCTATCCCTGATGCATTATGGGGACTGTAGTACATTGCGGTATTATTCAAAAATACAGTGTACAGTCATAATAAACTAAAGAAAAAAGACAACATCGTATCAATATACGAGCCTTTGTTTGTTTGTAGTGTGCTGGATAGTGCATGCAGTACATGCCTGTAGCTGCTGAGAAACAACAAACATGTTATTATAATGACAGTCTCACAATAAAGATGATGCGTATCACGACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1715153 True 1535 lncRNA 0.42 1 86464403 86465937

Neighbor

gene id symbol gene type direction distance location
LOC118940507 kif5a coding upstream 12041 86276390 ~ 86452362 (+)
mars1 mars coding upstream 226049 86183733 ~ 86238354 (+)
LOC118936559 LOC106566131 coding upstream 358466 86102351 ~ 86105937 (+)
LOC110494777 LOC106566131 coding upstream 362092 86092647 ~ 86102311 (+)
LOC110493285 LOC106566129 coding upstream 454962 85849052 ~ 86009441 (+)
soat2 LOC106566146 coding downstream 1189 86467126 ~ 86511354 (+)
tarbp2 tarbp2 coding downstream 190741 86656678 ~ 86673359 (+)
sp1 sp1 coding downstream 233601 86699538 ~ 86711214 (+)
LOC110494798 amhr2 coding downstream 249164 86715101 ~ 86734187 (+)
prr13 NA coding downstream 313107 86779044 ~ 86781359 (+)
G1500168 NA non-coding upstream 196 86460154 ~ 86464207 (+)
G1500172 NA non-coding upstream 4538 86458377 ~ 86459865 (+)
G1500176 NA non-coding upstream 8190 86453100 ~ 86456213 (+)
G1500259 NA non-coding upstream 30328 86433703 ~ 86434075 (+)
G1500258 NA non-coding upstream 31671 86432489 ~ 86432732 (+)
G1500267 NA non-coding downstream 664 86466601 ~ 86466938 (+)
G1500270 NA non-coding downstream 43678 86509615 ~ 86510645 (+)
G1500171 LOC106566147 non-coding downstream 48829 86514766 ~ 86519779 (+)
G1500169 NA non-coding downstream 65329 86531266 ~ 86535084 (+)
G1500180 NA non-coding downstream 69781 86535718 ~ 86536031 (+)
G1500239 NA other upstream 80858 86382298 ~ 86383545 (+)
G1500198 NA other upstream 196228 86267328 ~ 86268175 (+)
G1499923 LOC106566127 other upstream 752544 85625443 ~ 85711859 (+)
G1499374 NA other upstream 1171282 85291785 ~ 85293121 (+)
LOC110494772 LOC105007909 other upstream 1176287 85269122 ~ 85288116 (+)
G1500170 LOC106566147 other downstream 54893 86520830 ~ 86527030 (+)
G1501148 NA other downstream 702602 87168539 ~ 87169007 (+)
LOC110494789 bloc1s1 other downstream 958573 87415720 ~ 87486890 (+)
LOC110494816 LOC106566192 other downstream 1623720 88089634 ~ 88143474 (+)
G1502352 NA other downstream 2303933 88769870 ~ 88800640 (+)

Expression


Co-expression Network