G1500840


Basic Information

Item Value
gene id G1500840
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 86536234 ~ 86537116 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1715977
GAGTAAACAAAGCCATTGTTTGTAtgagcctgatcccagatctgtttgttctgTTTTGCCAATTCCTATTGTTTATCTATGGTGCCAAACATAAGTGTTGTCAAGATGGGACTAACAAGTCTAGGATCAGGTTAGGACATGGCCAGGGGATATTCTGATGCAGCGAAGGACAATAACGAACCATTCCATACTGTTCGCTAAACTGAGTAAAATTATTTCTGTATCTATTTTAGACATTTATGAAGAGAGTTAATATACGATAGTAAGCATCCATGCACTAAGCTGAAATCTGTGTGTTGTTACGGTATACACCAGAGAGattcgtttttttttctctttttactTCTAAAACATAAGATATGATGAGACCCTACTTGAAATGCTGTGCTTGTCTGTGAGCTGAGCGGACGACTTTAACATTCAGCGGCTGTCTGTTTGTTCTTAAAGCACTTGGACCAAAACTAGTCTCTCTTGGCAGACTCGTACCAGTGGGAAAGAGACCAAAACTAGTCTCTCTTGGCAGACTCGTACAGTGGCTGTGGGAAAGAGACCAAAACTAGTCTCTCTTGGCAGACTCGTACAGTGGCTGTGGGAAAGAGACCAAAACTAGTCTCTCTTGGCAGACTCGTACAGTGGCTGTGGGAAAGAGACCAAATCTAGTCTCTCTTGGCAGACTCGTACCAGTGGGAAAGAGACCAAAACTAGTCTCTCTTGGCAGACTCGTACAGTGGCTGTGGGAAAGAGACCAAAACTAGTCTCTCTTGGCAGACTCGTACAGTGGCTGTGGGAAAGAGACCAAATCTAGTCTCTCTTGGCAGACTCGTACCAGTGGGAAAGAGACCAAAACTAGTCTCTCTTGGCAGACTCGTACAGTGGCTGTGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1715977 True 883 lncRNA 0.44 1 86536234 86537116

Neighbor

gene id symbol gene type direction distance location
dctn2 LOC106566142 coding downstream 260175 86249232 ~ 86276059 (-)
LOC110494779 ddit3 coding downstream 293243 86236554 ~ 86242991 (-)
LOC110493286 LOC106566136 coding downstream 352629 86118575 ~ 86183605 (-)
LOC110494776 LOC106566127 coding downstream 823104 85710201 ~ 85713130 (-)
LOC110494775 LOC106566119 coding downstream 1110840 85344521 ~ 85425394 (-)
igsf8 igsf8 coding upstream 3683 86540799 ~ 86555989 (-)
sp7 sp7 coding upstream 68824 86605940 ~ 86610581 (-)
tespa1 LOC106566176 coding upstream 136336 86673452 ~ 86697487 (-)
LOC110495202 LOC106566175 coding upstream 174337 86711453 ~ 86714926 (-)
LOC110494797 LOC106596199 coding upstream 203432 86740548 ~ 86774465 (-)
G1500861 NA non-coding downstream 27156 86504834 ~ 86509078 (-)
G1500835 NA non-coding downstream 84610 86451086 ~ 86451624 (-)
G1500833 LOC106566150 non-coding downstream 86749 86449241 ~ 86449485 (-)
G1500832 NA non-coding downstream 90023 86445833 ~ 86446211 (-)
G1500830 NA non-coding downstream 90867 86442547 ~ 86445367 (-)
G1500866 NA non-coding upstream 6171 86543287 ~ 86543987 (-)
G1500879 NA non-coding upstream 38466 86575582 ~ 86579680 (-)
G1500889 NA non-coding upstream 76564 86613680 ~ 86615356 (-)
G1500900 NA non-coding upstream 98903 86636019 ~ 86728444 (-)
G1500913 NA non-coding upstream 134431 86671547 ~ 86673353 (-)
G1500834 LOC106566150 other downstream 85500 86449679 ~ 86450734 (-)
G1499684 NA other downstream 1248117 85251788 ~ 85288117 (-)
G1499671 NA other downstream 1313115 85221125 ~ 85223119 (-)
G1498522 NA other downstream 2478842 84051010 ~ 84057392 (-)
LOC110493290 map3k12 other upstream 260949 86798065 ~ 86880836 (-)
G1501650 LOC106566166 other upstream 596942 87134058 ~ 87166800 (-)
G1501745 NA other upstream 857664 87394780 ~ 87395835 (-)
dnsl3 dnsl3 other upstream 1625162 88162116 ~ 88175346 (-)
G1502489 NA other upstream 1821036 88358152 ~ 88425505 (-)

Expression


Co-expression Network