G1500287


Basic Information

Item Value
gene id G1500287
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 86580388 ~ 86580650 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1715282
atctcccgcctgttcagcgcagccggagcctctctcctctcctgcgctgtcggagtctcccgcctgttcagcgcagccagaactgccagtctgcatgaagcagcccgagctgccagtctgcaatgagctgccagtctgcaaggagctgccagtctgcaaggagctgccagtctgcaaggagctgtcagtctgtatggagcagcctgagctgtcagtctgcatggagcagcctgagctgtccgtctgcatgaagcagcctgagc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1715282 True 263 lncRNA 0.62 1 86580388 86580650

Neighbor

gene id symbol gene type direction distance location
soat2 LOC106566146 coding upstream 69034 86467126 ~ 86511354 (+)
LOC118940507 kif5a coding upstream 128026 86276390 ~ 86452362 (+)
mars1 mars coding upstream 342034 86183733 ~ 86238354 (+)
LOC118936559 LOC106566131 coding upstream 474451 86102351 ~ 86105937 (+)
LOC110494777 LOC106566131 coding upstream 478077 86092647 ~ 86102311 (+)
tarbp2 tarbp2 coding downstream 76028 86656678 ~ 86673359 (+)
sp1 sp1 coding downstream 118888 86699538 ~ 86711214 (+)
LOC110494798 amhr2 coding downstream 134451 86715101 ~ 86734187 (+)
prr13 NA coding downstream 198394 86779044 ~ 86781359 (+)
LOC110494796 LOC106582661 coding downstream 200921 86781571 ~ 86797881 (+)
G1500284 NA non-coding upstream 11136 86569036 ~ 86569252 (+)
G1500283 NA non-coding upstream 12135 86567353 ~ 86568253 (+)
G1500272 NA non-coding upstream 39385 86539782 ~ 86541003 (+)
G1500174 NA non-coding upstream 42203 86537543 ~ 86538185 (+)
G1500175 NA non-coding upstream 43261 86536585 ~ 86537127 (+)
G1500337 NA non-coding downstream 78706 86659356 ~ 86660411 (+)
G1500346 NA non-coding downstream 108327 86688977 ~ 86689293 (+)
G1500349 NA non-coding downstream 126840 86707490 ~ 86708062 (+)
G1500355 NA non-coding downstream 139587 86720237 ~ 86720856 (+)
G1500359 NA non-coding downstream 157512 86738162 ~ 86740217 (+)
G1500170 LOC106566147 other upstream 53358 86520830 ~ 86527030 (+)
G1500239 NA other upstream 196843 86382298 ~ 86383545 (+)
G1500198 NA other upstream 312213 86267328 ~ 86268175 (+)
G1499923 LOC106566127 other upstream 868529 85625443 ~ 85711859 (+)
G1499374 NA other upstream 1287267 85291785 ~ 85293121 (+)
G1501148 NA other downstream 587889 87168539 ~ 87169007 (+)
LOC110494789 bloc1s1 other downstream 843860 87415720 ~ 87486890 (+)
LOC110494816 LOC106566192 other downstream 1509007 88089634 ~ 88143474 (+)
G1502352 NA other downstream 2189220 88769870 ~ 88800640 (+)
G1502370 NA other downstream 2226328 88806978 ~ 88808969 (+)

Expression


Co-expression Network