G1500913


Basic Information

Item Value
gene id G1500913
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 86671547 ~ 86673353 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1716061
CTGAAATCaagtattttatttaaaaaaggaACAAATCAAAACCGTGATGGACCGCGTTTCAGTTCAACTATGTATTTGGGCAACACGTCCCACAATTGTCAAACATTGGAAAAgagaggatacctagtcagttgtacaactgaaatgggTCTTCTACATTTAACCCTAACTAATCTGATGCGGTGCGTTGTGTTTCTCTCACTGCTTGCTCATCATGATGTAGCAGCGACCAATGGTCACTCTACCACAGCCAGTATACTTCAGACACTCGCTACCAATACTATTCTTGACTCAACCTCCCATATGAAACCATTAAGGCTTGACTATCTGAACTGGTGGGAGTAAACATGGGAGGATATAGAGTTCAGGCTATACCATTAGCATGTAACAGGAAGTAGAGGAGCAGATTAGTCAGCCGTTGTGCAAGAGAATCCAACTATATTAAATGCAGCGATACAATTCCATCTCAAATTAGATGcgagcctggtcccagatctgtttgtgcttttggCCTACTCTGTCATTGTATTAACATTGCAATTCCATAAGTAGTGGGTAAGAGACCTTGAACAGACTGGCACACGGGCTAATTAGATGGACCAACACAGTTGAAGGGAAGTGATATAATCAATTCATTGAGGGGCCATTGACACGGTTTTACGAGAGCAACCAGCTAACATCTAAAATTACTAATTTTAAATCACAGTAATCTATTCACAATTTCAAATAGGGTTTTGTGAGGTCTAacagaaaaaataaaataaatggtaAAGTACACAATGTTAAATGTAATTCCAAAACTCTAACATTTTGCATTTCAGATGTTAAGCAATCACAATTTAAAAATGTACACATTTTAACAGTTATCAGATGACTcttctttaaaataaaaaatagtaaaTTACTTAACACAAATGACAAGATGGGCTGGATCTTGTCTACTTGGCAATAAAAGTACACAAGTCTCTAATTTAAGAATTCATGTCGTTAAAAGGTCCACTTTTCAATGTCCAAAATTAGACTTCATTCAGGCCAAGACTTCttcaacgggggggggggggggggaggtatTTTTGGTTGACGACAAAGTACTTGCTAGCTAATGAAAAGGCAACCAAAGCCAATCATTGTAGTTGTGGCAACAAATAAAAAGGTCAATGAGGCTACAGTCAAACGGGGGTCGTTGTATTTTGCCCTTTCCCTGCAGAGTATCTCTCTAGGCCTGTGACAGCAGAGGAGGTGGGTGACTGACCATCCAAATAAATGGTGTAGCCAATCAAGAGGACATTGGGGACTATGTGGGATATCTTCAAGGCATAGGGACAAATTTATCTAGGGCTATGTGGGATATCTTCAAGGCATAGGGACAAATTTATCTAGGGCTATGAGGGATATCTTCAGGGGGCATTTAGGAATGAACAGACCAGATAGGAGAACTACAGGGCTGTGGGGGGGGACGGACAAATTCCAATTCCCACATCATGGGTAATTCTGGATCAATCAATGGTTACTTCCCTTGACCACCATTGGTTGGAAGATGCTTCCACCCTCCGAGGTGGATGTGTCATGATCAGGGTCTAGGTTGTTGCCATGGAGAGAGGTTGGTCTGGGAGACGGTCACTTCCCCCCAGCCATGATTTTGAGGTATTGCAGTGCATTGTGGGCTGCGCTGGCGCGGGCACCGTCCTGATTGGGTGCGAAGCCGTGGCACACTGTGATTGGCTGAGTGGATAGCTCTACCAGACACTGGCACAGACCGCTCAGA

Function

NR:

description
RISC-loading complex subunit TARBP2 isoform X2

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1716061 True 1765 lncRNA 0.43 2 86671547 86673353

Neighbor

gene id symbol gene type direction distance location
sp7 sp7 coding downstream 60966 86605940 ~ 86610581 (-)
igsf8 igsf8 coding downstream 115558 86540799 ~ 86555989 (-)
dctn2 LOC106566142 coding downstream 395488 86249232 ~ 86276059 (-)
LOC110494779 ddit3 coding downstream 428556 86236554 ~ 86242991 (-)
LOC110493286 LOC106566136 coding downstream 487942 86118575 ~ 86183605 (-)
tespa1 LOC106566176 coding upstream 99 86673452 ~ 86697487 (-)
LOC110495202 LOC106566175 coding upstream 38100 86711453 ~ 86714926 (-)
LOC110494797 LOC106596199 coding upstream 67195 86740548 ~ 86774465 (-)
LOC110493290 map3k12 coding upstream 127600 86798065 ~ 86880836 (-)
col2a1b LOC106566180 coding upstream 276857 86950210 ~ 87034105 (-)
G1500889 NA non-coding downstream 56191 86613680 ~ 86615356 (-)
G1500879 NA non-coding downstream 91867 86575582 ~ 86579680 (-)
G1500866 NA non-coding downstream 127560 86543287 ~ 86543987 (-)
G1500840 NA non-coding downstream 134431 86536234 ~ 86537116 (-)
G1500861 NA non-coding downstream 162469 86504834 ~ 86509078 (-)
G1500918 NA non-coding upstream 2279 86675632 ~ 86676110 (-)
G1500930 NA non-coding upstream 20523 86693876 ~ 86694307 (-)
G1500941 NA non-coding upstream 30036 86703389 ~ 86781368 (-)
G1500911 sp1 non-coding upstream 35342 86708695 ~ 86711199 (-)
G1500958 NA non-coding upstream 59317 86732670 ~ 86733096 (-)
G1500834 LOC106566150 other downstream 220813 86449679 ~ 86450734 (-)
G1499684 NA other downstream 1383430 85251788 ~ 85288117 (-)
G1499671 NA other downstream 1448428 85221125 ~ 85223119 (-)
G1498522 NA other downstream 2614155 84051010 ~ 84057392 (-)
G1501650 LOC106566166 other upstream 460705 87134058 ~ 87166800 (-)
G1501745 NA other upstream 721427 87394780 ~ 87395835 (-)
dnsl3 dnsl3 other upstream 1488925 88162116 ~ 88175346 (-)
G1502489 NA other upstream 1684799 88358152 ~ 88425505 (-)

Expression


Co-expression Network