G1500941


Basic Information

Item Value
gene id G1500941
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 86703389 ~ 86781368 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1716096
tttggtttattttttttttcttactgGGGAAATTCCACACATCTCGCTCACTCGCTCAGCTATAGCCTATATATTATTTATAGTTGGAACTATAATCAACCATTTGAAATATTACTTATCACCAGTGTAAAGGCATAATATTATACATTATAGTGCGTATCCTCATGGCTGTGCACACATTCATAGGCCCTATATCCCTAAAATGTTAAGACTGTGAAGGCATAATTGTGTTCATTATACATACTTTTGTTACAGTGTTATACAATTAATATTCAAATCATTTTCCAATCAATTTTTCCCCATTCTTAataatagtcccccccccccatcctaacACGTTCCTTTAACCTCATTGCAATTtaggtagaagaagaagaggccATTTTTCCCCATTTAAATCAAGGATGTCTTTCTGACACTGTGTTGGATGTTGTTGGTGACATCACTCCtcgtcgctgctgctgctgctgctactgcttgaAGAGTGCTGGGGGGAAAAAACATGAACATTTAGGTCACTTAGCAGACTCTCTTACCCACAGTGACTTACAGTCGGTTCATTCAACTAGGTTTAGACGACCACATAACAGTTGTAAGTTCATCAATAAAGAAGCTATCAGTGAAATCCGTGCTAGTAAGAGCTAGTACATGACAAGTTGTCTCGACGGCTGAATAAAGAAAGTAGGCGTCACTCACACAGCTCCACCGATGAAACAAGAACAAAATAGGTGGACAGAACCTCAGAAACCCAGAAATAAAATATTGCATCAGATGCTCAATTAAGTCCTGGGGGTAGACATTTTTAAAAGATACAGGCAGGGTGACAGCTCTACCCCCTCTCAGGCAAGCCTCACTCTctcacaacaaaacaataacattTTTGACAGCAGGATGAGAAACGATATACTCAGACAAATAAACAAAAAgtttggtacacacacacacacacacacacatata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1716096 True 960 lncRNA 0.39 2 86703389 86781368

Neighbor

gene id symbol gene type direction distance location
tespa1 LOC106566176 coding downstream 5902 86673452 ~ 86697487 (-)
sp7 sp7 coding downstream 92808 86605940 ~ 86610581 (-)
igsf8 igsf8 coding downstream 147400 86540799 ~ 86555989 (-)
dctn2 LOC106566142 coding downstream 427330 86249232 ~ 86276059 (-)
LOC110494779 ddit3 coding downstream 460398 86236554 ~ 86242991 (-)
LOC110493290 map3k12 coding upstream 19585 86798065 ~ 86880836 (-)
col2a1b LOC106566180 coding upstream 168842 86950210 ~ 87034105 (-)
LOC110494790 ppp1r1a coding upstream 479125 87260493 ~ 87296463 (-)
npffl npff coding upstream 528057 87309425 ~ 87319111 (-)
itga7 LOC106566153 coding upstream 550871 87330714 ~ 87413554 (-)
G1500930 NA non-coding downstream 9082 86693876 ~ 86694307 (-)
G1500918 NA non-coding downstream 27279 86675632 ~ 86676110 (-)
G1500913 NA non-coding downstream 30036 86671547 ~ 86673353 (-)
G1500889 NA non-coding downstream 88033 86613680 ~ 86615356 (-)
G1500879 NA non-coding downstream 123709 86575582 ~ 86579680 (-)
G1500943 NA non-coding upstream 7160 86788528 ~ 86790791 (-)
G1500974 NA non-coding upstream 26217 86807585 ~ 86808139 (-)
G1500984 NA non-coding upstream 55539 86836907 ~ 86837571 (-)
G1500986 NA non-coding upstream 65069 86846437 ~ 86846926 (-)
G1500834 LOC106566150 other downstream 252655 86449679 ~ 86450734 (-)
G1499684 NA other downstream 1415272 85251788 ~ 85288117 (-)
G1499671 NA other downstream 1480270 85221125 ~ 85223119 (-)
G1498522 NA other downstream 2645997 84051010 ~ 84057392 (-)
G1501650 LOC106566166 other upstream 352690 87134058 ~ 87166800 (-)
G1501745 NA other upstream 613412 87394780 ~ 87395835 (-)
dnsl3 dnsl3 other upstream 1380910 88162116 ~ 88175346 (-)
G1502489 NA other upstream 1576784 88358152 ~ 88425505 (-)

Expression


Co-expression Network