Gene
RNA
| Item | Value |
|---|---|
| gene id | G1500997 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048581.1 |
| NCBI id | CM023235.2 |
| chromosome length | 95212422 |
| location | 86861708 ~ 86861979 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: DNA (cytosine-5)-methyltransferase 3A-like isoform X4 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1716156 | True | 272 | lncRNA | 0.43 | 1 | 86861708 | 86861979 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110494797 | LOC106596199 | coding | downstream | 87243 | 86740548 ~ 86774465 (-) |
| LOC110495202 | LOC106566175 | coding | downstream | 146782 | 86711453 ~ 86714926 (-) |
| tespa1 | LOC106566176 | coding | downstream | 164221 | 86673452 ~ 86697487 (-) |
| sp7 | sp7 | coding | downstream | 251127 | 86605940 ~ 86610581 (-) |
| igsf8 | igsf8 | coding | downstream | 305719 | 86540799 ~ 86555989 (-) |
| col2a1b | LOC106566180 | coding | upstream | 88231 | 86950210 ~ 87034105 (-) |
| LOC110494790 | ppp1r1a | coding | upstream | 398514 | 87260493 ~ 87296463 (-) |
| npffl | npff | coding | upstream | 447446 | 87309425 ~ 87319111 (-) |
| itga7 | LOC106566153 | coding | upstream | 470260 | 87330714 ~ 87413554 (-) |
| LOC110495200 | LOC106566159 | coding | upstream | 632125 | 87494104 ~ 87507588 (-) |
| G1500995 | NA | non-coding | downstream | 3373 | 86858093 ~ 86858335 (-) |
| G1500991 | NA | non-coding | downstream | 4509 | 86856941 ~ 86857199 (-) |
| LOC110493290 | map3k12 | non-coding | downstream | 11238 | 86798065 ~ 86880836 (-) |
| G1500998 | NA | non-coding | upstream | 1260 | 86863239 ~ 86863579 (-) |
| G1501030 | NA | non-coding | upstream | 98886 | 86960865 ~ 86961581 (-) |
| G1500993 | NA | non-coding | upstream | 118532 | 86980511 ~ 86980909 (-) |
| G1501051 | NA | non-coding | upstream | 155514 | 87017493 ~ 87018949 (-) |
| G1501071 | yo84 | non-coding | upstream | 190782 | 87052761 ~ 87052981 (-) |
| G1500834 | LOC106566150 | other | downstream | 410974 | 86449679 ~ 86450734 (-) |
| LOC110494779 | ddit3 | other | downstream | 618780 | 86236554 ~ 86242991 (-) |
| G1499684 | NA | other | downstream | 1573591 | 85251788 ~ 85288117 (-) |
| G1499671 | NA | other | downstream | 1638589 | 85221125 ~ 85223119 (-) |
| G1501650 | LOC106566166 | other | upstream | 272079 | 87134058 ~ 87166800 (-) |
| G1501745 | NA | other | upstream | 532801 | 87394780 ~ 87395835 (-) |
| dnsl3 | dnsl3 | other | upstream | 1300299 | 88162116 ~ 88175346 (-) |
| G1502489 | NA | other | upstream | 1496173 | 88358152 ~ 88425505 (-) |
| G1502566 | NA | other | upstream | 1688387 | 88550366 ~ 88552831 (-) |
