G1500405


Basic Information

Item Value
gene id G1500405
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 86926829 ~ 86951867 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1715439
TGTCAATTGTtttttttttcttttatttCCAATTTACATGAATCAAAACCGTAACAAAAACATGATCAtcatatttaataataataataataatagtaatgatgTTATTATTAacaatattactattattattaatattaaacAATATATTTACTACCCCCTCACAAACGAATGCACACCCTCTGCCCTGGTCGTGGTGCTTTCCCTCTGTGTAAATGAGGGCTGGATTGTCCAGTCGTGATATCAAGTCAAAAAGCCATATCCCGTTCCTGATCCTAGAGGGGCATGGCCAGGGCCGAGGTACTTCCTACCAGGGCAGAAGGTACTTCCTGTGTGAGGGGACAGCAGGGGGTTTATGGGAGGAAGTGGAGTGGGATAGGTCAACGGTCAAAGTCAACTTCTGGTGGGCTTCTCACAACATGGGGTCTAATGCACCAAAGAGAAGATTGCCAAAGCTGGATTTGTAAACTTGGATACAGGATTTAACTTTCCtctgttgtttatttattttctttgtgTGAGGTAGCTTAAAATATTATAATTAAAACAAAATGAAATAAATTTAGAGCTCGGATTGATTCCGAATTGAACATGTCTCTTTACAAAATATATTATGGACATGGTTTTTGTGTCATTGGGTTTACCACGGAGAAGGGTCAGGGTTgggttggagggaggggggggggggggcagcaataTTTACCACTCTGAAAAATGATCTCAGCGTGAAATGTACTCTCTGAaaaatgcatatatatatatatatatatatgtatacacacatatacatatatgtacaCACATTATAAACATGTCACTAATACATTAGTATCTGGTTGTTAAAGAATACAGACTGGTTTTACAACAATAGCACCATTTGACtttattataatagacagtaactTCCTGATACACACTGGGGCGGCGGTTGGAAGTAGGAACACCTGCACTTATCACACTGCCAGATTTTTTTGGTTTGGAATTGATATAATATTTAGGGtgtggaggtatagaggaggaACATGAAAAGGGGGAACTGATAGAATATGTATGTTGTTGTGGGTGGGGCCTTTTTACAGGCTACACACACTCAGTCCTAACACACCTGGGACCCACACctgaacaataaataaataacaccAACTCATTGTCTGGCACGctgcctctttctcctctttctcctttttctcctcttctcctcgaTCCTTCTTGTTAGTGGGGTGGTGCTCCCAgggtggggggtggagggagggctGGGGCACCATGGGAGGGGGGTCTGATGGAGGGAGACTGGAAGGCCACGAAATCCCAGATGAATATTGCCGGTGCCATTCAGTGCAGGACTTAGTTGGAAAAAGCACTTTCTACTTaaacaaaaaaattatataaaaGTGTCTTGATCTTTCTCtattctttctttcattcttcctTTTTTTGATAGAAgcgtgtgttcctctctctcataTTTGATGTGTTTTTCCCCTCTacttctccttctcttcatccctctttctttacAAGAAGCAAACTGCGCCGACGTCAACACCAAACTCTTGGTCCGCTCCTCCAATATCCACAGGAGCGATGTCCACGATGGGCAGCCGGCTGGTCTTCTGGGATCTGTACTCAATCACTGTCTTTCCCCACGTTCCTTTATGTTT

Function

NR:

description
PREDICTED: collagen alpha-1(II) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1715439 True 1661 lncRNA 0.41 2 86926829 86951867

Neighbor

gene id symbol gene type direction distance location
myg1 cssa12h12orf10 coding upstream 17129 86883315 ~ 86909700 (+)
LOC110494796 LOC106582661 coding upstream 128948 86781571 ~ 86797881 (+)
prr13 NA coding upstream 145470 86779044 ~ 86781359 (+)
LOC110494798 amhr2 coding upstream 192642 86715101 ~ 86734187 (+)
sp1 sp1 coding upstream 215615 86699538 ~ 86711214 (+)
nckap1l LOC106566166 coding downstream 182229 87134096 ~ 87172285 (+)
LOC110494792 LOC106566161 coding downstream 229584 87181451 ~ 87254075 (+)
LOC110494789 bloc1s1 coding downstream 463853 87415720 ~ 87486890 (+)
LOC110519410 LOC106566157 coding downstream 481844 87433711 ~ 87441188 (+)
LOC110494787 LOC106566158 coding downstream 489972 87441839 ~ 87480286 (+)
G1500423 NA non-coding upstream 30955 86894957 ~ 86895874 (+)
G1500421 NA non-coding upstream 35981 86890394 ~ 86890848 (+)
G1500408 NA non-coding upstream 64179 86862386 ~ 86862650 (+)
G1500407 NA non-coding upstream 64879 86861597 ~ 86861950 (+)
G1500402 NA non-coding upstream 73759 86852608 ~ 86853070 (+)
G1501084 NA non-coding downstream 112684 87064551 ~ 87065037 (+)
G1501086 NA non-coding downstream 114575 87066442 ~ 87069755 (+)
G1501091 NA non-coding downstream 120537 87072404 ~ 87072742 (+)
G1501092 NA non-coding downstream 120918 87072785 ~ 87074657 (+)
G1501093 NA non-coding downstream 121124 87072991 ~ 87077802 (+)
G1500170 LOC106566147 other upstream 399799 86520830 ~ 86527030 (+)
G1500239 NA other upstream 543284 86382298 ~ 86383545 (+)
G1500198 NA other upstream 658654 86267328 ~ 86268175 (+)
G1499923 LOC106566127 other upstream 1214970 85625443 ~ 85711859 (+)
G1499374 NA other upstream 1633708 85291785 ~ 85293121 (+)
G1501148 NA other downstream 216672 87168539 ~ 87169007 (+)
LOC110494816 LOC106566192 other downstream 1137790 88089634 ~ 88143474 (+)
G1502352 NA other downstream 1818003 88769870 ~ 88800640 (+)
G1502370 NA other downstream 1855111 88806978 ~ 88808969 (+)

Expression


Co-expression Network