G1501686


Basic Information

Item Value
gene id G1501686
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 87258220 ~ 87295356 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1716962
ttactattttatacattgtagaataatagtgaagacatcaaatgaaataacacacaaggaatcatgtagtaaccaaaacaagtgttaaaaaaaatcaaaatatattttatatttgagattcttcaaagtagccacccgttgccttgacagctttgcactctcttggcattctctcaaccagcttctcttggcaaaccctggaatgagtaaaaCATTCTCTAACATGAAGTTCCAAACCGGGACAGGAGATACGTATTTGGCTATATTTCATGcaaagtgtttttttgttgtacACACAAACTGTAGCAGCCTACCACTCCCATGTCTAATATGCCTCCTGCGTAAAACACATGAATCAAAATATTGTTCATTGTTATTGTAATTGGTTTATTAATTGTTAATTAATATAACTAAGATATTTCTAAGATTGCTTTAATGTTTTAGGACATTCTGTCCTGGACTCTTGAAAAACAAGCAGTAGTCGTGGTTGGCTAACAGAGatcctaaacaacaacaacataacaggatGCCTATTTTTATGAGTCACGGGGCAGTCAGAAGCCGCCtcacaaatgacaccctattccctatgtagtgcactacttttgaccaggacccatagggcactagtaaaaagtagtgcactatataggaaatagggtgccatttgggatgcgtggAGGGAATCGTCTCTGATACAATTTCGGAACTGAGATCAGTCTCTGTCCATGTGAATCTCTGAAGTCTAAAATGACAGATAAGGGACCTTCCGTTGGACAGAAGGACTCTGGCTGAACTTTGACCTTCTAAACTAAAACAACATTGACTACTGACATACCACTCATGCATGGCACGACTTTTACCTCACACTCCCTTAGTACTGTGCTAAACCCAGTACATACACTGTTTTTTTTGTTCAGTACTTTTAATGTATGTACAATAACAACATCCAGAAACGTTCGTAACTTATTTCATCTTTGGTAATTATATttattttctacaggattgatcCCATACTCTGATGTGGCATTAGGCCCATGATTGAGTGACATTTTAAACAACAGATGTAGaattttaatttgatcaccctgttgcaggagatcTTTCTTGCATTGCAGGACATGTAAAACTTTGAGATTTTAGACTTGATTGTTCCTGTAGACTTGATTGTATCAAACCCTACCAAAAAGAAATGGACAATTAATTATATTTATCATAATTCACATTTATAAAACTGGCTTAAATTAAGATTCTACACCTGTATTGAGCTGTCGACAGCTACTGTTCAGTGTCATCATGTCCTTTTGATTATAGACTGGGTCTTTATTCCATGTTATATATGTATAGTACACAGCAAATGAATCACGTGCAAATTAAAGATGTCTACAGAAATGTCA

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1716962 True 1397 lncRNA 0.36 2 87258220 87295356

Neighbor

gene id symbol gene type direction distance location
col2a1b LOC106566180 coding downstream 224115 86950210 ~ 87034105 (-)
LOC110493290 map3k12 coding downstream 377384 86798065 ~ 86880836 (-)
LOC110494797 LOC106596199 coding downstream 483755 86740548 ~ 86774465 (-)
LOC110495202 LOC106566175 coding downstream 543294 86711453 ~ 86714926 (-)
tespa1 LOC106566176 coding downstream 560733 86673452 ~ 86697487 (-)
npffl npff coding upstream 14069 87309425 ~ 87319111 (-)
itga7 LOC106566153 coding upstream 36883 87330714 ~ 87413554 (-)
LOC110495200 LOC106566159 coding upstream 198748 87494104 ~ 87507588 (-)
LOC110493297 LOC106566189 coding upstream 849260 88144616 ~ 88159004 (-)
dnsl3 dnsl3 coding upstream 866760 88162116 ~ 88175346 (-)
G1501679 NA non-coding downstream 14628 87243355 ~ 87243592 (-)
G1501672 NA non-coding downstream 27390 87229227 ~ 87230830 (-)
G1501650 LOC106566166 non-coding downstream 91420 87134058 ~ 87166800 (-)
G1501128 NA non-coding downstream 128096 87124254 ~ 87130124 (-)
G1501117 NA non-coding downstream 148159 87109835 ~ 87110061 (-)
G1501721 NA non-coding upstream 44849 87340205 ~ 87340469 (-)
G1501768 NA non-coding upstream 135007 87430363 ~ 87486836 (-)
G1501774 NA non-coding upstream 145505 87440861 ~ 87442058 (-)
G1501776 NA non-coding upstream 152700 87448056 ~ 87449891 (-)
G1500834 LOC106566150 other downstream 807486 86449679 ~ 86450734 (-)
LOC110494779 ddit3 other downstream 1015292 86236554 ~ 86242991 (-)
G1499684 NA other downstream 1970103 85251788 ~ 85288117 (-)
G1501745 NA other upstream 99424 87394780 ~ 87395835 (-)
G1502489 NA other upstream 1062796 88358152 ~ 88425505 (-)
G1502566 NA other upstream 1255010 88550366 ~ 88552831 (-)
LOC110493292 NA other upstream 1577419 88872775 ~ 88877452 (-)

Expression


Co-expression Network