G1501768


Basic Information

Item Value
gene id G1501768
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 87430363 ~ 87486836 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1717055
ttattccAGAATAGAGAAACGTCACATCAAAAACAGAGTTAAAAGACGAGCATTTGACACGAATAGCCTGGTTTCTCCCGAGATCCCTTTGTGCTCTCGTCAACTCCATTTGCGGTTAAATGTGTTTGGCGTGACAATGAGTCGGTACGATAGCAGAAActgactggcactcaggctacaaatacaccgtgagagagagagaacgattaTTTGAACATGCATGACCCAAAAAAGGTTTTTCAAGAAGCAAGAGACTTAACGTCGCTTTTATTAAAAACAGGGTAGAGATACCACCCGTTTAACCCAGACGGAAGTCACTGGTGAACGCATCGTTCAGTCTGGGTAGTTTTAGTCATCCAGGAGAGACGGCAGTTACCAGACAAGTCTCTCCTTCTAAACAGGCGACCAATTAGAAGCCAATAAATCCTATTTCTCCATGGTACTATTTCACAAACAGACCTCTTTTGTTCCAACGTCTCGCTAGCTAATCCACATTTTCGACATCCTATTCATCCTCATGGGAATAGGAAAATGGAATAACTTCAGAGAATGACTAACGggtaccccagagagagagagagagactaaaaccAATCTGAACTATTGACCTTTGCCAAAGAAGATGAGTTAAAACATTGCATTTCCCATACAACAGATACATATGCTTTGTCTTGTTCTCCTACACAGATTGACTCACAAAGGAAACGATGTTTGGACAAACAGCCAAATGATTATTAGGAGTGTGGCTAAATTCACATGGAACCCATCTGAAGTTGTTGCCCATTATACCTGCCCTGTGGACAATTAGTTCCCGATATTTCCACGACAGTTAATATATTTTGGTACAGACCTTTAACAATTAAAGGGTTGTGGACAACACAACATTGCAGATGGGTCATAGGCGCTCTGTTAAATAAGGTTTATTTGTCCACAGGCATACTGTTCCTACTGTAACACAATGTGTCACTCGTGAACACTGGGCAAGCCTTAAAGCCTTAGTCATTACTGAAGCCTTGAAGCCTTGAATCAACTTTCatcagttgttttttttaaaccagaaTCCTGGTATCCGTGGTAAGTCAACCACTGTTTCACAGTGAAAGCTAGCAGCAGGCTATCAGGCTACTGAAGCTAGCAGCAGGCTATCAGGCTACTGAAGCTAGCAGCAGGCTATCAGGCTACTGAAGCTAGCAGCAGGCTATCAGGCTACTGAAGCTAGCAGCAGGCCATCAGGCTACTGAAGCTAGCAGCAGGCTATCAGTTCCAGGTTATGGTTCAGCGTATCTATGAAGAGGCTGATGTGAGCTGACCCTTGTGTACGTACTCCAGAGCTGTGGCGATGGTTCTCATGTCCACCTCAATGCTGCGAGCCCAGTTCTCCACATCACCTATTT
>TU1717056
ttattccAGAATAGAGAAACGTCACATCAAAAACAGAGTTAAAAGACGAGCATTTGACACGAATAGCCTGGTTTCTCCCGAGATCCCTTTGTGCTCTCGTCAACTCCATTTGCGGTTAAATGTGTTTGGCGTGACAATGAGTCGGTACGATAGCAGAAActgactggcactcaggctacaaatacaccgtgagagagagagaacgattaTTTGAACATGCATGACCCAAAAAAGGTTTTTCAAGAAGCAAGAGACTTAACGTCGCTTTTATTAAAAACAGGGTAGAGATACCACCCGTTTAACCCAGACGGAAGTCACTGGTGAACGCATCGTTCAGTCTGGGTAGTTTTAGTCATCCAGGAGAGACGGCAGTTACCAGACAAGTCTCTCCTTCTAAACAGGCGACCAATTAGAAGCCAATAAATCCTATTTCTCCATGGTACTATTTCACAAACAGACCTCTTTTGTTCCAACGTCTCGCTAGCTAATCCACATTTTCGACATCCTATTCATCCTCATGGGAATAGGAAAATGGAATAACTTCAGAGAATGACTAACGggtaccccagagagagagagagagactaaaaccAATCTGAACTATTGACCTTTGCCAAAGAAGATGAGTTAAAACATTGCATTTCCCATACAACAGATACATATGCTTTGTCTTGTTCTCCTACACAGATTGACTCACAAAGGAAACGATGTTTGGACAAACAGCCAAATGATTATTAGGAGTGTGGCTAAATTCACATGGAACCCATCTGAAGTTGTTGCCCATTATACCTGCCCTGTGGACAATTAGTTCCCGATATTTCCACGACAGTTAATATATTTTGGTACAGACCTTTAACAATTAAAGGGTTGTGGACAACACAACATTGCAGATGGGTCATAGGCGCTCTGTTAAATAAGGTTTATTTGTCCACAGGCATACTGTTCCTACTGTAACACAATGTGTCACTCGTGAACACTGGGCAAGCCTTAAAGCCTTAGTCATTACTGAAGCCTTGAAGCCTTGAATCAACTTTCatcagttgttttttttaaaccagaaTCCTGGTATCCGTGGTAAGTCAACCACTGTTTCACAGTGAAAGCTAGCAGCAGGCTATCAGGCTACTGAAGCTAGCAGCAGGCTATCAGGCTACTGAAGCTAGCAGCAGGCTATCAGGCTACTGAAGCTAGCAGCAGGCTATCAGGTTATGGTTCAGCGTATCTATGAAGAGGCTGATGTGAGCTGACCCTTGTGTACGTACTCCAGAGCTGTGGCGATGGTTCTCATGTCCACCTCAATGCTGCGAGCCCAGTTCTCCACATCACCTATTT
>TU1717058
ttattccAGAATAGAGAAACGTCACATCAAAAACAGAGTTAAAAGACGAGCATTTGACACGAATAGCCTGGTTTCTCCCGAGATCCCTTTGTGCTCTCGTCAACTCCATTTGCGGTTAAATGTGTTTGGCGTGACAATGAGTCGGTACGATAGCAGAAActgactggcactcaggctacaaatacaccgtgagagagagagaacgattaTTTGAACATGCATGACCCAAAAAAGGTTTTTCAAGAAGCAAGAGACTTAACGTCGCTTTTATTAAAAACAGGGTAGAGATACCACCCGTTTAACCCAGACGGAAGTCACTGGTGAACGCATCGTTCAGTCTGGGTAGTTTTAGTCATCCAGGAGAGACGGCAGTTACCAGACAAGTCTCTCCTTCTAAACAGGCGACCAATTAGAAGCCAATAAATCCTATTTCTCCATGGTACTATTTCACAAACAGACCTCTTTTGTTCCAACGTCTCGCTAGCTAATCCACATTTTCGACATCCTATTCATCCTCATGGGAATAGGAAAATGGAATAACTTCAGAGAATGACTAACGggtaccccagagagagagagagagactaaaaccAATCTGAACTATTGACCTTTGCCAAAGAAGATGAGTTAAAACATTGCATTTCCCATACAACAGATACATATGCTTTGTCTTGTTCTCCTACACAGATTGACTCACAAAGGAAACGATGTTTGGACAAACAGCCAAATGATTATTAGGAGTGTGGCTAAATTCACATGGAACCCATCTGAAGTTGTTGCCCATTATACCTGCCCTGTGGACAATTAGTTCCCGATATTTCCACGACAGTTAATATATTTTGGTACAGACCTTTAACAATTAAAGGGTTGTGGACAACACAACATTGCAGATGGGTCATAGGCGCTCTGTTAAATAAGGTTTATTTGTCCACAGGCATACTGTTCCTACTGTAACACAATGTGTCACTCGTGAACACTGGGCAAGCCTTAAAGCCTTAGTCATTACTGAAGCCTTGAAGCCTTGAATCAACTTTCatcagttgttttttttaaaccagaaTCCTGGTATCCGTGGTAAGTCAACCACTGTTTCACAGTGAAAGCTAGCAGCAGGCTATCAGGCTACTGAAGCTAGCAGCAGGCTATCAGGCTACTGAAGCTAGCAGCAGGCTATCAGGCTACTGAAGCTAGCAGCAGGCTATCAGGCTACTGAAGCTAGCAGCAGGCCATCAGGCTACTGAAGCTAGCAGCAGGCCATCAGGCTACTGAAGCTAGCAGCAGGCTATCAGTTCCAGGTTATGGTTCAGCGTATCTATGAAGAGGCTGATGTGAGCTGACCCTTGTGTACGTACTCCAGAGCTGTGGCGATGGTTCTCATGTCCACCTCAATGCTGCGAGCCCAGTTCTCCACATCACCTATTT
>TU1717059
ttattccAGAATAGAGAAACGTCACATCAAAAACAGAGTTAAAAGACGAGCATTTGACACGAATAGCCTGGTTTCTCCCGAGATCCCTTTGTGCTCTCGTCAACTCCATTTGCGGTTAAATGTGTTTGGCGTGACAATGAGTCGGTACGATAGCAGAAActgactggcactcaggctacaaatacaccgtgagagagagagaacgattaTTTGAACATGCATGACCCAAAAAAGGTTTTTCAAGAAGCAAGAGACTTAACGTCGCTTTTATTAAAAACAGGGTAGAGATACCACCCGTTTAACCCAGACGGAAGTCACTGGTGAACGCATCGTTCAGTCTGGGTAGTTTTAGTCATCCAGGAGAGACGGCAGTTACCAGACAAGTCTCTCCTTCTAAACAGGCGACCAATTAGAAGCCAATAAATCCTATTTCTCCATGGTACTATTTCACAAACAGACCTCTTTTGTTCCAACGTCTCGCTAGCTAATCCACATTTTCGACATCCTATTCATCCTCATGGGAATAGGAAAATGGAATAACTTCAGAGAATGACTAACGggtaccccagagagagagagagagactaaaaccAATCTGAACTATTGACCTTTGCCAAAGAAGATGAGTTAAAACATTGCATTTCCCATACAACAGATACATATGCTTTGTCTTGTTCTCCTACACAGATTGACTCACAAAGGAAACGATGTTTGGACAAACAGCCAAATGATTATTAGGAGTGTGGCTAAATTCACATGGAACCCATCTGAAGTTGTTGCCCATTATACCTGCCCTGTGGACAATTAGTTCCCGATATTTCCACGACAGTTAATATATTTTGGTACAGACCTTTAACAATTAAAGGGTTGTGGACAACACAACATTGCAGATGGGTCATAGGCGCTCTGTTAAATAAGGTTTATTTGTCCACAGGCATACTGTTCCTACTGTAACACAATGTGTCACTCGTGAACACTGGGCAAGCCTTAAAGCCTTAGTCATTACTGAAGCCTTGAAGCCTTGAATCAACTTTCatcagttgttttttttaaaccagaaTCCTGGTATCCGTGGTAAGTCAACCACTGTTTCACAGTGAAAGCTAGCAGCAGGCTATCAGGCTACTGAAGCTAGCAGCAGGCTATCAGGCTACTGAAGCTAGCAGCAGGCTATCAGGTTATGGTTCAGCGTATCTATGAAGAGGCTGATGTGAGCTGACCCTTGTGTACGTACTCCAGAGCTGTGGCGATGGTTCTCATGTCCACCTCAATGCTGCGAGCCCAGTTCTCCACATCACCTATTT
>TU1717060
agtttgaaatatacaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtaTGCTTTGTCTTGTTCTCCTACACAGATTGACTCACAAAGGAAACGATGTTTGGACAAACAGCCAAATGATTATTAGGAGTGTGGCTAAATTCACATGGAACCCATCTGAAGTTGTTGCCCATTATACCTGCCCTGTGGACAATTAGTTCCCGATATTTCCACGACAGTTAATATATTTTGGTACAGACCTTTAACAATTAAAGGGTTGTGGACAACACAACATTGCAGATGGGTCATAGGCGCTCTGTTAAATAAGGTTTATTTGTCCACAGGCATACTGTTCCTACTGTAACACAATGTGTCACTCGTGAACACTGGGCAAGCCTTAAAGCCTTAGTCATTACTGAAGCCTTGAAGCCTTGAATCAACTTTCatcagttgttttttttaaaccagaaTCCTGGTATCCGTGGTAAGTCAACCACTGTTTCACAGTGAAAGCTAGCAGCAGGCTATCAGGCTACTGAAGCTAGCAGCAGGCTATCAGGCTACTGAAGCTAGCAGCAGGCTATCAGGCTACTGAAGCTAGCAGCAGGCTATCAGGTTATGGTTCAGCGTATCTATGAAGAGGCTGATGTGAGCTGACCCTTGTGTACGTACTCCAGAGCTGTGGCGATGGTTCTCATGTCCACCTCAATGCTGCGAGCCCAGTTCTCCACATCACCTATTT
>TU1717062
ttattccAGAATAGAGAAACGTCACATCAAAAACAGAGTTAAAAGACGAGCATTTGACACGAATAGCCTGGTTTCTCCCGAGATCCCTTTGTGCTCTCGTCAACTCCATTTGCGGTTAAATGTGTTTGGCGTGACAATGAGTCGGTACGATAGCAGAAActgactggcactcaggctacaaatacaccgtgagagagagagaacgattaTTTGAACATGCATGACCCAAAAAAGGTTTTTCAAGAAGCAAGAGACTTAACGTCGCTTTTATTAAAAACAGGGTAGAGATACCACCCGTTTAACCCAGACGGAAGTCACTGGTGAACGCATCGTTCAGTCTGGGTAGTTTTAGTCATCCAGGAGAGACGGCAGTTACCAGACAAGTCTCTCCTTCTAAACAGGCGACCAATTAGAAGCCAATAAATCCTATTTCTCCATGGTACTATTTCACAAACAGACCTCTTTTGTTCCAACGTCTCGCTAGCTAATCCACATTTTCGACATCCTATTCATCCTCATGGGAATAGGAAAATGGAATAACTTCAGAGAATGACTAACGggtaccccagagagagagagagagactaaaaccAATCTGAACTATTGACCTTTGCCAAAGAAGATGAGTTAAAACATTGCATTTCCCATACAACAGATACATATGCTTTGTCTTGTTCTCCTACACAGATTGACTCACAAAGGAAACGATGTTTGGACAAACAGCCAAATGATTATTAGGAGTGTGGCTAAATTCACATGGAACCCATCTGAAGTTGTTGCCCATTATACCTGCCCTGTGGACAATTAGTTCCCGATATTTCCACGACAGTTAATATATTTTGGTACAGACCTTTAACAATTAAAGGGTTGTGGACAACACAACATTGCAGATGGGTCATAGGCGCTCTGTTAAATAAGGTTTATTTGTCCACAGGCATACTGTTCCTACTGTAACACAATGTGTCACTCGTGAACACTGGGCAAGCCTTAAAGCCTTAGTCATTACTGAAGCCTTGAAGCCTTGAATCAACTTTCatcagttgttttttttaaaccagaaTCCTGGTATCCGTGGTAAGTCAACCACTGTTTCACAGTGAAAGCTAGCAGCAGGCTATCAGGCTACTGAAGCTAGCAGCAGGCTATCAGGTTATGGTTCAGCGTATCTATGAAGAGGCTGATGTGAGCTGACCCTTGTGTACGTACTCCAGAGCTGTGGCGATGGTTCTCATGTCCACCTCAATGCTGCGAGCCCAGTTCTCCACATCACCTATTT

Function

NR:

description
biogenesis of lysosome-related organelles complex 1 subunit 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1717055 False 1394 lncRNA 0.44 2 87430363 87431924
TU1717056 False 1332 lncRNA 0.43 2 87430363 87431924
TU1717058 False 1422 lncRNA 0.44 2 87430363 87431924
TU1717059 False 1304 lncRNA 0.43 2 87430363 87431924
TU1717060 False 833 lncRNA 0.43 4 87430363 87486836
TU1717062 True 1276 lncRNA 0.43 2 87430363 87431924

Neighbor

gene id symbol gene type direction distance location
itga7 LOC106566153 coding downstream 16809 87330714 ~ 87413554 (-)
npffl npff coding downstream 111252 87309425 ~ 87319111 (-)
LOC110494790 ppp1r1a coding downstream 133900 87260493 ~ 87296463 (-)
col2a1b LOC106566180 coding downstream 396258 86950210 ~ 87034105 (-)
LOC110493290 map3k12 coding downstream 549527 86798065 ~ 86880836 (-)
LOC110495200 LOC106566159 coding upstream 7268 87494104 ~ 87507588 (-)
LOC110493297 LOC106566189 coding upstream 657780 88144616 ~ 88159004 (-)
dnsl3 dnsl3 coding upstream 675280 88162116 ~ 88175346 (-)
LOC110494815 NA coding upstream 694847 88181683 ~ 88183757 (-)
zgc:171566 LOC106566184 coding upstream 746848 88233684 ~ 88245505 (-)
G1501721 NA non-coding downstream 89894 87340205 ~ 87340469 (-)
G1501690 NA non-coding downstream 112213 87292799 ~ 87318150 (-)
G1501686 NA non-coding downstream 135007 87258220 ~ 87295356 (-)
G1501699 NA non-coding downstream 151782 87278092 ~ 87278581 (-)
G1501810 NA non-coding upstream 19370 87506206 ~ 87506957 (-)
G1501803 LOC106566159 non-coding upstream 23151 87509987 ~ 87515194 (-)
G1501867 NA non-coding upstream 156736 87643572 ~ 87646232 (-)
G1501896 NA non-coding upstream 210245 87697081 ~ 87701702 (-)
G1501911 NA non-coding upstream 244295 87731131 ~ 87787054 (-)
G1501745 NA other downstream 34528 87394780 ~ 87395835 (-)
G1501650 LOC106566166 other downstream 271119 87134058 ~ 87166800 (-)
G1500834 LOC106566150 other downstream 979629 86449679 ~ 86450734 (-)
LOC110494779 ddit3 other downstream 1187435 86236554 ~ 86242991 (-)
G1502489 NA other upstream 871316 88358152 ~ 88425505 (-)
G1502566 NA other upstream 1063530 88550366 ~ 88552831 (-)
LOC110493292 NA other upstream 1385939 88872775 ~ 88877452 (-)
pcbp4 LOC106566209 other upstream 2089125 89575961 ~ 89725809 (-)

Expression


Co-expression Network