G1501774


Basic Information

Item Value
gene id G1501774
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 87440861 ~ 87442058 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1717070
CTTTCAAAATCATGAATTGGTCTCGTTTTATTATTTGTGTTCATATAATGGACATCAGTTCTTTCAATAAGAACAGCCTTATTGAATATGAGGGTTctgcaaatcaaatgttattagtcacatgacccgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagggtaatgctgaatacaataggtgttgtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaattctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgttgtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgataaGTTAAGAATATTGCTCAAAATTAAGCAACATAAATAATGGCGGCGAAAAGGCACAGTAGGTCATTATTCAAATATTCCATGTTTTCTCTCAAAACTATAGGACATCATCTAGCTTTAAAAACACAGACAGTATAAAGAAATACATTGAATTAACTTTTCTAAATGTGTAGGCTACTCTACGTTCTGTACATTTGAACTCAAACAATACATTATTTTTGTATTCTTTAGTactgtattgtatagtatgggtttatattgtattatattgcaATGTATTGTGTGCTAATTAACTCTAGACACTCTTAGCAGGTCGTGGCATCACCAGTTTCAGCCCAATATCGATGACACAGGATGGCATGTAAGAGAGGGGGATCCATCCCAATTTAGCGTCCCAGCCGGCACTGTAGCGGGTTCGGGGGTAGCTAGACGCCAAGGCATGCTCCATGCAGTTAGTCACTTTACTCAGGTCCGAGTCACACACTGCGTTCATGATCAACC
>TU1717071
CTTTCAAAATCATGAATTGGTCTCGTTTTATTATTTGTGTTCATATAATGGACATCAGTTCTTTCAATAAGAACAGCCTTATTGAATATGAGGGTTctgcaaatcaaatgttattagtcacatgacccgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaattctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgttgtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgataaGTTAAGAATATTGCTCAAAATTAAGCAACATAAATAATGGCGGCGAAAAGGCACAGTAGGTCATTATTCAAATATTCCATGTTTTCTCTCAAAACTATAGGACATCATCTAGCTTTAAAAACACAGACAGTATAAAGAAATACATTGAATTAACTTTTCTAAATGTGTAGGCTACTCTACGTTCTGTACATTTGAACTCAAACAATACATTATTTTTGTATTCTTTAGTactgtattgtatagtatgggtttatattgtattatattgcaATGTATTGTGTGCTAATTAACTCTAGACACTCTTAGCAGGTCGTGGCATCACCAGTTTCAGCCCAATATCGATGACACAGGATGGCATGTAAGAGAGGGGGATCCATCCCAATTTAGCGTCCCAGCCGGCACTGTAGCGGGTTCGGGGGTAGCTAGACGCCAAGGCATGCTCCATGCAGTTAGTCACTTTACTCAGGTCCGAGTCACACACTGCGTTCATGATCAACC
>TU1717072
CTTTCAAAATCATGAATTGGTCTCGTTTTATTATTTGTGTTCATATAATGGACATCAGTTCTTTCAATAAGAACAGCCTTATTGAATATGAGGGTTctgcaaatcaaatgttattagtcacatgacccgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagggtaatgctgaatacaataggtgttgtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaattctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgttgtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgataaGTTAAGAATATTGCTCAAAATTAAGCAACATAAATAATGGCGGCGAAAAGGCACAGTAGGTCATTATTCAAATATTCCATGTTTTCTCTCAAAACTATAGGACATCATCTAGCTTTAAAAACACAGACAGTATAAAGAAATACATTGAATTAACTTTTCTAAATGTGTAGGCTACTCTACGTTCTGTACATTTGAACTCAAACAATACATTATTTTTGTATTCTTTAGTactgtattgtatagtatgggtttatattgtattatattgcaATGTATTGTGTGCTAATTAACTCTAGACACTCTTAGCAGGTCGTGGCATCACCAGTTTCAGCCCAATATCGATGACACAGGATGGCATGTAAGAGAGGGGGATCCATCCCAATTTAGCGTCCCAGCCGGCACTGTAGCGGGTTCGGGGGTAGCTAGACGCCAAGGCATGCTCCATGCAGTTAGTCACTTTACTCAGGTCCGAGTCACACACTGCGTTCATGATCAACC

Function

NR:

description
PREDICTED: retinol dehydrogenase 7-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1717070 False 1084 lncRNA 0.38 3 87440861 87442058
TU1717071 False 894 lncRNA 0.38 2 87440861 87442058
TU1717072 True 1084 lncRNA 0.38 3 87440861 87442058

Neighbor

gene id symbol gene type direction distance location
itga7 LOC106566153 coding downstream 27307 87330714 ~ 87413554 (-)
npffl npff coding downstream 121750 87309425 ~ 87319111 (-)
LOC110494790 ppp1r1a coding downstream 144398 87260493 ~ 87296463 (-)
col2a1b LOC106566180 coding downstream 406756 86950210 ~ 87034105 (-)
LOC110493290 map3k12 coding downstream 560025 86798065 ~ 86880836 (-)
LOC110495200 LOC106566159 coding upstream 52046 87494104 ~ 87507588 (-)
LOC110493297 LOC106566189 coding upstream 702558 88144616 ~ 88159004 (-)
dnsl3 dnsl3 coding upstream 720058 88162116 ~ 88175346 (-)
LOC110494815 NA coding upstream 739625 88181683 ~ 88183757 (-)
zgc:171566 LOC106566184 coding upstream 791626 88233684 ~ 88245505 (-)
G1501721 NA non-coding downstream 100392 87340205 ~ 87340469 (-)
G1501690 NA non-coding downstream 122711 87292799 ~ 87318150 (-)
G1501686 NA non-coding downstream 145505 87258220 ~ 87295356 (-)
G1501776 NA non-coding upstream 5998 87448056 ~ 87449891 (-)
G1501784 NA non-coding upstream 21245 87463303 ~ 87768500 (-)
G1501792 NA non-coding upstream 31647 87473705 ~ 87475027 (-)
G1501793 NA non-coding upstream 37890 87479948 ~ 87481000 (-)
G1501795 NA non-coding upstream 39665 87481723 ~ 87481969 (-)
G1501745 NA other downstream 45026 87394780 ~ 87395835 (-)
G1501650 LOC106566166 other downstream 281617 87134058 ~ 87166800 (-)
G1500834 LOC106566150 other downstream 990127 86449679 ~ 86450734 (-)
LOC110494779 ddit3 other downstream 1197933 86236554 ~ 86242991 (-)
G1502489 NA other upstream 916094 88358152 ~ 88425505 (-)
G1502566 NA other upstream 1108308 88550366 ~ 88552831 (-)
LOC110493292 NA other upstream 1430717 88872775 ~ 88877452 (-)
pcbp4 LOC106566209 other upstream 2133903 89575961 ~ 89725809 (-)

Expression


Co-expression Network