G1501647


Basic Information

Item Value
gene id G1501647
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 88335519 ~ 88336514 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1716912
cattTTGTCACAATCTCTTAGTACAACTGCAACTAAATTGATATGGAAACAACATAAGCAAAAACATAGCCCTCTTCACCAACGTGACTGTCATGAGGTACAGTACTGACTGATTTCATAATATCACCAATGTGACTGTCATGAGGTACAGTACTGACTGATTTCATAATATCACCAATGTGACTGTCATGAGGTACAGTACTGACTGATTTCATAATATCACCAATGTGACTGTCATGAGGTACAGTACTGACTGATTTCATAATAATGCAACTGATTTAATAATAAACCTGACTGATttcataataacaacaataatctCATTCtactttatatactgtaggtattatTGTAAATCTCATCCTACTTTAAATACTGTAGGTATTATTGTAAATCTCATCCTACTTCATGTTCTGTCGGTATTATTGGATAGTAGCATTTTCACAGAAAATCATCGAGCAGCTGTCGGGGATATTGAAATGTGATGGCAAAGTAACAACAGTAATTTTCTATGTTTGACAGCCAGGTATTTAATCAAAGTATTCCGTGCAAAAGCCACTACATTAGCATACAGACATTTCACTGAAATCAGAGTGAAATCCAGTAtccaga
>TU1716916
cattTTGTCACAATCTCTTAGTACAACTGCAACTAAATTGATATGGAAACAACATAAGCAAAAACATAGCCCTCTTCACCAACGTGACTGTCATGAGGTACAGTACTGACTGATTTCATAATATCACCAATGTGACTGTCATGAGGTACAGTACTGACTGATTTCATAATATCACCAATGTGACTGTCATGAGGTACAGTACTGACTGATTTCATAATATCACCAATGTGACTGTCATGAGGTACAGTACTGACTGATTCCATAATAACACCAATGTGACTGTCATGAGGTACAGTACTGACTGATTTCATAATATCACCAATGTGACTGTCATGAGGTACAGTACTGACTGATTTCATAATATCACCAATGTGACTGTCATGAGGTACAGTACTGACTGATTTCATAATATCACCAATGTGACTGTCATGAGGTACAGTACTGACTGATTCCATAATATCACCAATGTGACTGTCATGAGGTACAGTACTGACTGATTTCATAATATCACCAATGTGACTGTCATGAGGTACAGTACTGACTGATTTCATAATAATGCAACTGATTTAATAATAAACCTGACTGATttcataataacaacaataatctCATTCtactttatatactgtaggtattatTGTAAATCTCATCCTACTTTAAATACTGTAGGTATTATTGTAAATCTCATCCTACTTCATGTTCTGTCGGTATTATTGGATAGTAGCATTTTCACAGAAAATCATCGAGCAGCTGTCGGGGATATTGAAATGTGATGGCAAAGTAACAACAGTAATTTTCTATGTTTGACAGCCAGGTATTTAATCAAAGTATTCCGTGCAAAAGCCACTACATTAGCATACAGACATTTCACTGAAATCAGAGTGAAATCCAGTAtccaga

Function

NR:

description
PREDICTED: small proline-rich protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1716912 False 612 lncRNA 0.34 3 88335519 88336514
TU1716916 True 900 lncRNA 0.36 2 88335519 88336514

Neighbor

gene id symbol gene type direction distance location
LOC110493295 LOC106566198 coding upstream 102126 88203897 ~ 88233393 (+)
LOC110493296 mcm2 coding upstream 134774 88186354 ~ 88200745 (+)
LOC110494814 LOC106566185 coding upstream 149327 88183728 ~ 88186192 (+)
LOC110494816 LOC106566192 coding upstream 192045 88089634 ~ 88143474 (+)
LOC110494817 LOC100136539 coding upstream 255563 88074395 ~ 88079956 (+)
LOC110493294 LOC106566182 coding downstream 35564 88372078 ~ 88421226 (+)
LOC118940509 NA coding downstream 97834 88434348 ~ 88435516 (+)
LOC118940508 NA coding downstream 99432 88435946 ~ 88436832 (+)
LOC118940163 NA coding downstream 270254 88606768 ~ 88617815 (+)
LOC118940112 NA coding downstream 330531 88667045 ~ 88668051 (+)
G1501585 NA non-coding upstream 42608 88283969 ~ 88292911 (+)
G1501611 NA non-coding upstream 74048 88261168 ~ 88261471 (+)
G1501604 LOC101154678 non-coding upstream 87333 88247877 ~ 88248186 (+)
G1501600 NA non-coding upstream 111772 88223014 ~ 88223747 (+)
G1501649 NA non-coding downstream 3900 88340414 ~ 88340972 (+)
G1502171 NA non-coding downstream 9732 88346246 ~ 88346495 (+)
G1502175 NA non-coding downstream 12213 88348727 ~ 88348956 (+)
G1502180 NA non-coding downstream 84987 88421501 ~ 88423482 (+)
G1502212 NA non-coding downstream 121705 88458219 ~ 88458433 (+)
LOC110494789 bloc1s1 other upstream 848629 87415720 ~ 87486890 (+)
G1501148 NA other upstream 1166512 87168539 ~ 87169007 (+)
G1500170 LOC106566147 other upstream 1808489 86520830 ~ 86527030 (+)
G1500239 NA other upstream 1951974 86382298 ~ 86383545 (+)
G1502352 NA other downstream 433356 88769870 ~ 88800640 (+)
G1502370 NA other downstream 470464 88806978 ~ 88808969 (+)
LOC110493303 LOC106566213 other downstream 769657 89106147 ~ 89150807 (+)
G1503119 NA other downstream 1432043 89768557 ~ 89786154 (+)
G1503337 NA other downstream 1885031 90221545 ~ 90223659 (+)

Expression


Co-expression Network