G1502180


Basic Information

Item Value
gene id G1502180
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 88421501 ~ 88423482 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1717543
cacacacacacacacacacacacacacacacacaatttgattCATCTTTACCAAAAGATATACACAAATATTGTCGCAATGAAAGTAGTCCTGCCATTTTATAACTATTGACTCAATGCTTTCTCGTAGTCTGGATTGACCTGTGACGTACAGGTGACATTCTAAAATGACGCTGCCACCAAAACTTAGGCCTACCTGTGATTCAaaggggttaaatgtggaagacatttcagttgaatgcagtCAGTTGtttaactgactaggtatccccttttacTTTTACCATAGTGCTGTTAGTTTGTATAGGAGATTATGACCCGCAGAAATTAAACGCgagcagttagctagctagatacctgTAACAAATCActagtagttagctagctaggtacctgTAACAAATCActagtagttagctagctagatacctgTAACAAATCACTAGTAGTTCGCTAGCTAGGTGCCTTACAGGTGCCGTATCAAAGAAGCTCACTGAAAACCAAATGAAAAAGCAATTTTATGGTGAAGATAATGGCACCCAGTCCATCGCTGGAGATTGGAGAAGTCTATCACAGatagaaaacataatgttaaacTTCTTAACTCTCCTGCCTCGTATACATTACATGACATACCTTTATAAGAATGTACAAGGGGAAATGTTTTTAATCCATAAAGAAGaaacctttttaaaaaaaaaaaaaaattgaaagattttattttttatttctatggCGCTAAATAACCTGTAAAGCAAAAAATGTGTATTTAAAACGAGGGTTTTACTGAGAAAAACGTAAAATCTTTTTATTTCtaaataaaaattttaaaaaattggtAGAAAAGCCTGTGCTCATGTGCAGTGAGAGTGTCCCATGGTGAGTCTATAGGGCACATTATAAAGCAGCGAGCTTGCACTTTAATCATTCAACATCATAATTAATGATAAATCATAATAATAGATTGGATTTATATTGAGCTTTTCCAGATGCATTACATAGCAAAAAAAAGGGGGGGAGAACgactcacctcatccaccaccatTGTGTAGCATGGCGGCCATTTTGGAAAATCAACTcccaccacatatccacatatCATGGCGGAAGGTGAGGAAGAACTAATTGCTGGGTGTAAGGACCCAGTGCTCCCTCCACAAACCCCCACACTAGGGGGCTAAAGCCGCTACACCACAGGCTTCTCCAGGGCAGTTTAGCCCCTTGTCTCCCTATCACCCCACAACAATGCTGCTTCCAAGACAAATGACTTAAGAGGCTTGTGTAGTTAGTACTACACATTAAACATTGTGTCTTAGTGTCACACATTAAACATTGTGTCTTAGTGTCACACGTAGGTTGAGACATACTCTTGTCGTAAAGAATGTTGCTAAAATAAAATAGCGCTCACACATTTCATATAAAGAGGCACCATTTCTTCAGGCCTATAACGGAGATGCTACTGGGAACGGTCTTACATTGAAGTCACTGAGCAGAcgatcttatccagagcaacttacagaagTGAAAACATCTTATACATACAAAACATCTTTGTACTGATCCACCgtaggaatcgaacccacaagccTAGCGTTGCAAGCACCACACTCTACCAAATcaaaagtgtatttgtcacgtgcgccgaatacaacaggtagttagctagctagatacctgTAACAAATCACTAGTAGTTAGCtaggtatctagctagctagaccttacagtgaaatccttacttacaagcccttaaccaacagtgcaatgtTTAAGTAAAACATAGGCATTatgtaaacaatagat
>TU1717545
cacacacacacacacacacacacacacacacacaatttgattCATCTTTACCAAAAGATATACACAAATATTGTCGCAATGAAAGTAGTCCTGCCATTTTATAACTATTGACTCAATGCTTTCTCGTAGTCTGGATTGACCTGTGACGTACAGGTGACATTCTAAAATGACGCTGCCACCAAAACTTAGGCCTACCTGTGATTCAaaggggttaaatgtggaagacatttcagttgaatgcagtCAGTTGtttaactgactaggtatccccttttacTTTTACCATAGTGCTGTTAGTTTGTATAGGAGATTATGACCCGCAGAAATTAAACGCgagcagttagctagctagatacctgTAACAAATCActagtagttagctagctaggtacctgTAACAAATCActagtagttagctagctaggtacctgTAACAAATCActagtagttagctagctaggtacctgTAACAAATCActagtagttagctagctagatacctgTGACAAATCActagtagttagctagctagatacctgTGACAAATCActagtagttagctagctagatacctgTAACAAATCActagtagttagctagctagatacctgTAACAAATCACTAGTAGTTCGCTAGCTAGGTGCCTTACAGGTGCCGTATCAAAGAAGCTCACTGAAAACCAAATGAAAAAGCAATTTTATGGTGAAGATAATGGCACCCAGTCCATCGCTGGAGATTGGAGAAGTCTATCACAGatagaaaacataatgttaaacTTCTTAACTCTCCTGCCTCGTATACATTACATGACATACCTTTATAAGAATGTACAAGGGGAAATGTTTTTAATCCATAAAGAAGaaacctttttaaaaaaaaaaaaaaattgaaagattttattttttatttctatggCGCTAAATAACCTGTAAAGCAAAAAATGTGTATTTAAAACGAGGGTTTTACTGAGAAAAACGTAAAATCTTTTTATTTCtaaataaaaattttaaaaaattggtAGAAAAGCCTGTGCTCATGTGCAGTGAGAGTGTCCCATGGTGAGTCTATAGGGCACATTATAAAGCAGCGAGCTTGCACTTTAATCATTCAACATCATAATTAATGATAAATCATAATAATAGATTGGATTTATATTGAGCTTTTCCAGATGCATTACATAGCAAAAAAAAGGGGGGGAGAACgactcacctcatccaccaccatTGTGTAGCATGGCGGCCATTTTGGAAAATCAACTcccaccacatatccacatatCATGGCGGAAGGTGAGGAAGAACTAATTGCTGGGTGTAAGGACCCAGTGCTCCCTCCACAAACCCCCACACTAGGGGGCTAAAGCCGCTACACCACAGGCTTCTCCAGGGCAGTTTAGCCCCTTGTCTCCCTATCACCCCACAACAATGCTGCTTCCAAGACAAATGACTTAAGAGGCTTGTGTAGTTAGTACTACACATTAAACATTGTGTCTTAGTGTCACACGTAGGTTGAGACATACTCTTGTCGTAAAGAATGTTGCTAAAATAAAATAGCGCTCACACATTTCATATAAAGAGGCACCATTTCTTCAGGCCTATAACGGAGATGCTACTGGGAACGGTCTTACATTGAAGTCACTGAGCAGAcgatcttatccagagcaacttacagaagTGAAAACATCTTATACATACAAAACATCTTTGTACTGATCCACCgtaggaatcgaacccacaagccTAGCGTTGCAAGCACCACACTCTACCAAATcaaaagtgtatttgtcacgtgcgccgaatacaacaggtagttagctagctagatacctgTAACAAATCACTAGTAGTTAGCtaggtatctagctagctagaccttacagtgaaatccttacttacaagcccttaaccaacagtgcaatgtTTAAGTAAAACATAGGCATTatgtaaacaatagat
>TU1717547
cacacacacacacacacacacacacacacacacaatttgattCATCTTTACCAAAAGATATACACAAATATTGTCGCAATGAAAGTAGTCCTGCCATTTTATAACTATTGACTCAATGCTTTCTCGTAGTCTGGATTGACCTGTGACGTACAGGTGACATTCTAAAATGACGCTGCCACCAAAACTTAGGCCTACCTGTGATTCAaaggggttaaatgtggaagacatttcagttgaatgcagtCAGTTGtttaactgactaggtatccccttttacTTTTACCATAGTGCTGTTAGTTTGTATAGGAGATTATGACCCGCAGAAATTAAACGCgagcagttagctagctagatacctgTAACAAATCActagtagttagctagctaggtacctgTAACAAATCActagtagttagctagctagatacctgTGACAAATCActagtagttagctagctagatacctgTGACAAATCActagtagttagctagctagatacctgTAACAAATCActagtagttagctagctagatacctgTAACAAATCACTAGTAGTTCGCTAGCTAGGTGCCTTACAGGTGCCGTATCAAAGAAGCTCACTGAAAACCAAATGAAAAAGCAATTTTATGGTGAAGATAATGGCACCCAGTCCATCGCTGGAGATTGGAGAAGTCTATCACAGatagaaaacataatgttaaacTTCTTAACTCTCCTGCCTCGTATACATTACATGACATACCTTTATAAGAATGTACAAGGGGAAATGTTTTTAATCCATAAAGAAGaaacctttttaaaaaaaaaaaaaaattgaaagattttattttttatttctatggCGCTAAATAACCTGTAAAGCAAAAAATGTGTATTTAAAACGAGGGTTTTACTGAGAAAAACGTAAAATCTTTTTATTTCtaaataaaaattttaaaaaattggtAGAAAAGCCTGTGCTCATGTGCAGTGAGAGTGTCCCATGGTGAGTCTATAGGGCACATTATAAAGCAGCGAGCTTGCACTTTAATCATTCAACATCATAATTAATGATAAATCATAATAATAGATTGGATTTATATTGAGCTTTTCCAGATGCATTACATAGCAAAAAAAAGGGGGGGAGAACgactcacctcatccaccaccatTGTGTAGCATGGCGGCCATTTTGGAAAATCAACTcccaccacatatccacatatCATGGCGGAAGGTGAGGAAGAACTAATTGCTGGGTGTAAGGACCCAGTGCTCCCTCCACAAACCCCCACACTAGGGGGCTAAAGCCGCTACACCACAGGCTTCTCCAGGGCAGTTTAGCCCCTTGTCTCCCTATCACCCCACAACAATGCTGCTTCCAAGACAAATGACTTAAGAGGCTTGTGTAGTTAGTACTACACATTAAACATTGTGTCTTAGTGTCACACATTAAACATTGTGTCTTAGTGTCACACGTAGGTTGAGACATACTCTTGTCGTAAAGAATGTTGCTAAAATAAAATAGCGCTCACACATTTCATATAAAGAGGCACCATTTCTTCAGGCCTATAACGGAGATGCTACTGGGAACGGTCTTACATTGAAGTCACTGAGCAGAcgatcttatccagagcaacttacagaagTGAAAACATCTTATACATACAAAACATCTTTGTACTGATCCACCgtaggaatcgaacccacaagccTAGCGTTGCAAGCACCACACTCTACCAAATcaaaagtgtatttgtcacgtgcgccgaatacaacaggtagttagctagctagatacctgTAACAAATCACTAGTAGTTAGCtaggtatctagctagctagaccttacagtgaaatccttacttacaagcccttaaccaacagtgcaatgtTTAAGTAAAACATAGGCATTatgtaaacaatagat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1717543 False 1802 lncRNA 0.39 2 88421501 88423482
TU1717545 False 1955 lncRNA 0.39 2 88421501 88423482
TU1717547 True 1910 lncRNA 0.39 2 88421501 88423482

Neighbor

gene id symbol gene type direction distance location
LOC110493294 LOC106566182 coding upstream 275 88372078 ~ 88421226 (+)
LOC110493295 LOC106566198 coding upstream 188108 88203897 ~ 88233393 (+)
LOC110493296 mcm2 coding upstream 220756 88186354 ~ 88200745 (+)
LOC110494814 LOC106566185 coding upstream 235309 88183728 ~ 88186192 (+)
LOC110494816 LOC106566192 coding upstream 278027 88089634 ~ 88143474 (+)
LOC118940509 NA coding downstream 10866 88434348 ~ 88435516 (+)
LOC118940508 NA coding downstream 12464 88435946 ~ 88436832 (+)
LOC118940163 NA coding downstream 183286 88606768 ~ 88617815 (+)
LOC118940112 NA coding downstream 243563 88667045 ~ 88668051 (+)
cand2 LOC106566202 coding downstream 454302 88877784 ~ 88897509 (+)
G1502175 NA non-coding upstream 72545 88348727 ~ 88348956 (+)
G1502171 NA non-coding upstream 75006 88346246 ~ 88346495 (+)
G1501649 NA non-coding upstream 80529 88340414 ~ 88340972 (+)
G1501647 NA non-coding upstream 84987 88335519 ~ 88336514 (+)
G1501585 NA non-coding upstream 128590 88283969 ~ 88292911 (+)
G1502212 NA non-coding downstream 34737 88458219 ~ 88458433 (+)
G1502218 NA non-coding downstream 49076 88472558 ~ 88472769 (+)
G1502220 NA non-coding downstream 52570 88476052 ~ 88476312 (+)
G1502222 NA non-coding downstream 55049 88478531 ~ 88478857 (+)
G1502223 NA non-coding downstream 56472 88479954 ~ 88480242 (+)
LOC110494789 bloc1s1 other upstream 934611 87415720 ~ 87486890 (+)
G1501148 NA other upstream 1252494 87168539 ~ 87169007 (+)
G1500170 LOC106566147 other upstream 1894471 86520830 ~ 86527030 (+)
G1500239 NA other upstream 2037956 86382298 ~ 86383545 (+)
G1502352 NA other downstream 346388 88769870 ~ 88800640 (+)
G1502370 NA other downstream 383496 88806978 ~ 88808969 (+)
LOC110493303 LOC106566213 other downstream 682689 89106147 ~ 89150807 (+)
G1503119 NA other downstream 1345075 89768557 ~ 89786154 (+)
G1503337 NA other downstream 1798063 90221545 ~ 90223659 (+)

Expression


Co-expression Network