G1502408 (LOC106583741)


Basic Information

Item Value
gene id G1502408
gene name LOC106583741
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 88901184 ~ 88905941 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1717802
TATCACACTAAAgccattataatgcattatgaccCCCCACCCCCTAATATATCACACTAAAgccattataatgcattatgaccCCAACCATATCATAAACAGGCAAATACAGTAAATACTATTGACAGGTGTATAGATCATTTATTGAACAAACAACAGAGCCGTGGTCCCAGATCACTCGTGTTCCTCGCTGCGTAGCCTGGCATTGGGGTTGGTGATCTTGATGGCCAGCTGAGCTGCCCTCTCCACGATCAACTTCCTGTTCTTAGACGACACGTTGTGGGCTATCTCTGCAGCATGGACTTGTTGCTCATCATGAGGACCTCCAGCTCTCGGATGTTGTGGACCAGGAACTTCCTGAAGCCGGAGGGCAGCATGTGTTTAGTCTTCTTGTTGCTGCCGTAGCCGATGTTGGGCATCAGCATCTGGCCCTTGAAGCGCCGCCGCACCCTGTTGTCGATACCACGGGGTTTTCGCCAGTTTTGACTTTGACATAGCGGTCCGACTGATGTCTGATGAACTTCTTCACCCTCTTCTTGACGATCTTGGGCCTTTTCAGAGGCCTCAACGCTGCCATGTTGCCTGGAGGAACAGAAACAGTCCGTTAGCAGTACCCGGGAGGAAGAAGTATTTTATTAGCTACCCAGTGTAACGGCCCCAGTGTAACAGGTTAGGCCCCAGTGTAACAGGTTAGGCCCCAGTGTAACGGGTTAGGCCCCAGTGTAACGGCCCCAGTGTAACGGGTTAGGCCCCAGTGTAACGGCCCCAGTGTAACAGGTTAGGCCCCGGTGTAACGGCCCCAGTGTAACAGGTTGGGCCCCAGTGTAACGGGTTAGGCCCCAGTGTAAC
>TU1717803
TATCACACTAAAgccattataatgcattatgaccCCCCACCCCCTAATATATCACACTAAAgccattataatgcattatgaccCCAACCATATCATAAACAGGCAAATACAGTAAATACTATTGACAGGTGTATAGATCATTTATTGAACAAACAACAGAGCCGTGGTCCCAGATCACTCGTGTTCCTCGCTGCGTAGCCTGGCATTGGGGTTGGTGATCTTGATGGCCAGCTGAGCTGCCCTCTCCACGATCAACTTCCTGTTCTTAGACGACACGTTGTGGGCTATCTCTGCAGCATGGACTTGTTGCTCATCATGAGGACCTCCAGCTCTCGGATGTTGTGGACCAGGAACTTCCTGAAGCCGGAGGGCAGCATGTGTTTAGTCTTCTTGTTGCTGCCGTAGCCGATGTTGGGCATCAGCATCTGGCCCTTGAAGCGCCGCCGCACCCTGTTGTCGATACCACGGGGTTTTCGCCAGTTTCCTTGACTTTGACATAGCGGTCCGACTGATGTCTGATGAACTTCTTCACCCTCTTCTTGACGATCT
>TU1717800
ACTATTGACAGGTGTATAGATCATTTATTGAACAAACAACAGAGCCGTGGTCCCAGATCACTCGTGTTCCTCGCTGCGTAGCCTGGCATTGGGGTTGGTGATCTTGATGGCCAGCTGAGCTGCCCTCTCCACGATCAACTTCCTGTTCTTAGACGACACGTTGTGGGCTATCTCTGCAGCATGGGTcTTGTTGCTCATCATGAGGACCTCCAGCTCTCGGATGTTGTGGACCAGGAACTTCCTGAAGCCGGAGGGCAGCATGTGTTTAGTCTTCTTGTTGCTGCCGTAGCCGATGTTGGGCATCAGCATCTGGCCCTTGAAGCGCCGCCGCACCCTGTTGTCGATACCACGGGGTTTTCGCCAGTTTTGCTTGACTTTGACATAGCGGTCCGACTGATGTCTGATGAACTTCTTCACCCTCTTCTTGACGATCT
>TU1717801
GTGTACACTTTCAGAGGAAGGAAGAAATAAATAAATCGGAACATACTTGTTGCTCATCATGAGGACCTCCAGCTCTCGGATGTTGTGGACCAGGAACTTCCTGAAGCCGGAGGGCAGCATGTGTTTAGTCTTCTTGTTGCTGCCGTAGCCGATGTTGGGCATCAGCATCTGGCCCTTGAAGCGCCGCCGCACCCTGTTGTCGATACCACGGGGTTTTCGCCAGTTTTGCTACATTTGACATAGCGGTCCGACTGATGTCTGATGAACTTCTTCACCCTCTTCTTGACGATCT

Function

NR:

description
PREDICTED: 60S ribosomal protein L32-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1717802 False 849 lncRNA 0.52 4 88901184 88905941
TU1717803 False 549 lncRNA 0.49 4 88901184 88905638
TU1717800 False 434 lncRNA 0.53 3 88901859 88905638
TU1717801 True 292 lncRNA 0.50 2 88902900 88905638

Neighbor

gene id symbol gene type direction distance location
cand2 LOC106566202 coding upstream 3675 88877784 ~ 88897509 (+)
LOC118940112 NA coding upstream 233133 88667045 ~ 88668051 (+)
LOC118940163 NA coding upstream 283369 88606768 ~ 88617815 (+)
LOC118940508 NA coding upstream 464352 88435946 ~ 88436832 (+)
LOC118940509 NA coding upstream 465668 88434348 ~ 88435516 (+)
ssuh2.1 LOC106566200 coding downstream 6955 88912896 ~ 88965638 (+)
LOC110494825 LOC106566214 coding downstream 59906 88965847 ~ 89103615 (+)
LOC110493303 LOC106566213 coding downstream 200206 89106147 ~ 89150807 (+)
LOC110493302 LOC106583746 coding downstream 256809 89162750 ~ 89524314 (+)
LOC110494823 LOC106566211 coding downstream 626778 89532719 ~ 89539265 (+)
G1502395 NA non-coding upstream 28354 88872438 ~ 88872830 (+)
G1502365 NA non-coding upstream 108870 88790280 ~ 88792314 (+)
G1502358 NA non-coding upstream 122904 88775383 ~ 88778280 (+)
G1502349 NA non-coding upstream 133379 88767591 ~ 88767805 (+)
G1502346 NA non-coding upstream 136461 88764093 ~ 88764723 (+)
G1502439 NA non-coding downstream 74719 88980660 ~ 88981430 (+)
G1502462 NA non-coding downstream 118015 89023956 ~ 89024485 (+)
G1502465 NA non-coding downstream 124162 89030103 ~ 89030533 (+)
G1502478 NA non-coding downstream 167159 89073100 ~ 89084957 (+)
G1502370 NA other upstream 92215 88806978 ~ 88808969 (+)
G1502352 NA other upstream 100544 88769870 ~ 88800640 (+)
LOC110494816 LOC106566192 other upstream 776310 88089634 ~ 88143474 (+)
LOC110494789 bloc1s1 other upstream 1414294 87415720 ~ 87486890 (+)
G1501148 NA other upstream 1732177 87168539 ~ 87169007 (+)
G1503119 NA other downstream 862616 89768557 ~ 89786154 (+)
G1503337 NA other downstream 1315604 90221545 ~ 90223659 (+)
LOC110504503 LOC106566236 other downstream 3379114 92282926 ~ 92317484 (+)
G1505894 NA other downstream 3413604 92319545 ~ 92320777 (+)

Expression


Co-expression Network